EY660267

Overview
NameEY660267
Unique NameEY660267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660267 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 42/112 (37.50%), Postives = 55/112 (49.11%), Query Frame = 1
Query:  109 LDLSQNNFFGELPISIGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKFLGEFPWSSGNFSSLKLLDLRSCGFWGKVPHAISNFTRLQFLFLGFNNFSGDLLGSI 444
            L LS  NF G L   +G L +LK L L  NG  GE+P    NL SL  LDL  N+  G  P + GN   L+ L L      G +P +++    L  L L  N+ SG +  S+
Sbjct:   75 LTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQSL 186          
BLAST of EY660267 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  109 LDLSQNNFFGELPISIGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKFLGEFPWSSGNFSSLKLLDLRSCGFWGKVPHAISNFTRLQFLFLGFNNFSGDL 432
            +DL      G L   +G L +L+ L+L  N   G +P+++ NL +L  LDL  N F G  P S G  S L+ L L +    G +P +++N T LQ L L  N  SG +
Sbjct:   74 VDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSV 181          

HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   16 NLNXAKEKDFSANFLSSEWTISF*TIRNLKELDLSQNNFFGELPISIGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKFLGEFPWSSGNFSSLKLLDLRSCGFWGKVPH--AISNFTRLQF 396
            N N     D     LS         ++NL+ L+L  NN  G +P ++GNL +L  LDL  N F G +P S+  L  L  L L+ N   G  P S  N ++L++LDL +    G VP   + S FT + F
Sbjct:   67 NENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISF 195          
The following BLAST results are available for this feature:
BLAST of EY660267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
Y5129_ARATH2.719e-1137.50Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH3.551e-1136.11Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660267 ID=EY660267; Name=EY660267; organism=Citrus sinensis; type=EST; length=938bp
TNGAGGGGGCTTACGAATCTTAATNCTGCCAAAGAGAAGGATTTCTCTGC
AAATTTTTTGTCGAGTGAGTGGACTATTTCCTTTTGAACTATTAGAAATT
TGAAAGAACTTGACCTTTCACAAAATAATTTTTTTGGTGAGTTGCCTATT
TCCATAGGAAATCTTGGTTCATTGAAAGAACTTGACCTTTCACAAAATGG
ATTTTTCGGTGAGTTGCCTACTTCCATTCGAAATCTTTTTTCTTTGGAAA
AACTTGACCTTTCATTTAATAAATTTTTGGGTGAGTTTCCATGGTCGTCT
GGAAATTTTAGTTCTTTGAAGCTATTAGATCTGAGGTCATGTGGTTTTTG
GGGCAAAGTTCCACATGCAATTAGTAATTTCACCCGGCTACAATTTTTGT
TTCTTGGATTTAATAATTTTTCGGGTGACTTACTTGGTTCCATCGGAAAT
CTTAGGTCATTGGAAGCAATATATATGTCTAAGTGTAATTTTTCAGGTCA
AATTACATCTTCACTTAGGAATCTTACCGAACTTGTCGTCCTTTGAATGG
GTCAAAAATTTTATGGAGGAACGATAGAGTTAGATGGTTTACTTTCTAGC
TGGAAAAAATTGGAAGGTTTAGCTCTCTTATTAAAAAGGTGGCAGTGGTC
ACCAAAGCCATTTTTATATACCTTTAAAGAAATTTCGAAATTAGATTGGG
GTCTGGAATTTAACAAATTTCAAAATTTCTGGAAAACAACGGGAAATGGG
GGCGCCGGACCTTTTCTGAAATAGAATTCTGGGAAAAAGACCAAAAGGGT
GGGTTAACCCCAAATGGGGAAACTCAGGGGCGTGGACTTTTGCTAAATTT
GTAAACCGGGTTGGATAGGGAACCGCCTTTTTTCCGGGGAAAACGGGGAT
TGGGGAATTTGGTTTATACTTTAAATTTTAAAAGAGAC
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