EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            FD + L+ +LLRGI+  G+ KPS IQ++ I     G D++ +A++GTGKTA+F    L++ D      Q L+L PTRELA Q  +V + LG Y+ V+V A  GGTS+++D   L + VH++V TPGRV D+ +K
Sbjct:   51 FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQK 184          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            F+   L+  LL GIY  GFE+PS IQ+  I     G D++ +A++GTGKTA FC   L+++D      Q ++L PTRELA Q  +V + LG +L ++V    GGTS+++D   L   VH++VGTPGR+ D+ +K
Sbjct:  126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKK 259          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            F+   L+  LL GI+  GFE+PS IQ+  I     G D++ +A++GTGKTA F    L+++D    + Q L+L PTRELA Q  +V + LG ++ VKV    GGT++R+D   L+  VH+VVGTPGRV D+  K
Sbjct:   46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGK 179          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 57/134 (42.54%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++  + + QAL+L PTRELA Q  +V + LG +LG+ V    GGT +++D   LS  VH++VGTPGR+ D+  K
Sbjct:   51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGK 184          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            F+   L+  LL GIY  GFE+PS IQ+  I     G D++ +A++GTGKTA FC   L+++D      Q ++L PTRELA Q  +V + LG +L ++V    GGTS+++D   L   VH++VGTPGR+ D+ +K
Sbjct:  136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKK 269          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  262 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQ 672
            +TF+   L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+++     + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L+  VH++VGTPGRV D+  ++
Sbjct:   34 NTFEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 170          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++ +  + + QAL+L PTRELA Q  +V + LG +LG+ V    GGT +++D   LS  VH++VGTPGR+ D+  K
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILDLASK 182          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 63/163 (38.65%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  193 DARMNDLLGSDGQDFFTSYDEVYDT----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            DA+  + L    +D     ++V  T    F+   ++  L+ GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++    + QAL+L PTRELA Q   V + LG +LG+ V    GGT + +D   L+  VH++VGTPGRV D+  K
Sbjct:   20 DAKWKEQLNVPAKDARPQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASK 182          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 660
            F+  GL+  LL GIY  GFE+PS IQ++ I     G D++ +A++GTGKTA+F    L +++  L   QAL+L PTRELA Q  +V + LG ++  ++V    GGT++R+D   L   VH++VGTPGR+ D+
Sbjct:   38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL 169          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 660
            F+  GL+  LL GIY  GFE+PS IQ++ I     G D++ +A++GTGKTA+F    L +++  L   QAL+L PTRELA Q  +V + LG ++  ++V    GGT++R+D   L   VH++VGTPGR+ D+
Sbjct:   38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL 169          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX6_DICDI3.562e-2544.78Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
RH6_ORYSJ4.652e-2543.28DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
DHH1_SCHPO4.652e-2544.78Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]
DHH1_PHANO4.652e-2542.54ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
RH8_ORYSJ6.075e-2543.28DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
DHH1_VANPO7.935e-2542.34ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_COCIM7.935e-2542.54ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
DHH1_ASPNC7.935e-2538.65ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_CRYNV1.353e-2443.94ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
DHH1_CRYNE1.353e-2443.94ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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