EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.927e-52
Identity = 110/201 (54.73%), Postives = 142/201 (70.65%), Query Frame = 3
Query:  258 VLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEV------------ALRRIILTASGGAFRDWPVRNMKNLS 818
            +LGSTGSIGTQTL+IV+E  DKF VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+AGK+IALANKETLIA G  V+P   +   ++LPADSEHSAIFQCIQGLP               L+ I LTASGGAFRDW V ++KN++
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKAGKNIALANKETLIAAGSVVIPALKESKSRLLPADSEHSAIFQCIQGLPNYENADFSTGQIPNGLKAIHLTASGGAFRDWEVEDLKNVT 201          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.521e-52
Identity = 113/206 (54.85%), Postives = 142/206 (68.93%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNMK 809
            K ISVLGSTGSIGTQTL IV +  D+F VVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++        PE++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW   +++
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDRPAQCPEMVGGPDGLEVAASWGSAELVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWADTARLSTGVPTPGLRRIQLTASGGAFRDWNAADLE 207          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.521e-52
Identity = 111/205 (54.15%), Postives = 144/205 (70.24%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEV------------ALRRIILTASGGAFRDWPVRNMKNLS 818
            K I+VLGSTGSIGTQTL+IV E  +KF VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+A K+IALANKETLIA G  V+P   ++  ++LPADSEHSAIFQCIQGLP               L+ I LTASGGAFRDW V ++KN++
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKASKNIALANKETLIAAGSVVIPALKENKSRLLPADSEHSAIFQCIQGLPNYENADFVTGQIPNGLKAIHLTASGGAFRDWAVEDLKNVT 206          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_SYNSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9605) GN=dxr PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.897e-51
Identity = 113/204 (55.39%), Postives = 139/204 (68.14%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNMK 809
            K ISVLGSTGSIGTQTL I  E  ++F VVAL AG N+ LL +QV+R +P+VVA+ +  LL E++E L +      + P+++ G  G+  AA    A  VVTGIVGCAGL PT+AAI AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW   +++
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFRVVALTAGRNLKLLVEQVQRHRPEVVALADSDLLPELQERLKDAGVTGADAPQLVGGADGLNVAAAWDSADLVVTGIVGCAGLLPTLAAIRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRRIQLTASGGAFRDWTAADLE 205          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.210e-51
Identity = 112/206 (54.37%), Postives = 141/206 (68.45%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV------EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNMK 809
            K ISVLGSTGSIGTQTL IV +  D+F VVAL+AG N++LL  Q++R +P VVA+ +++LL E+K+ L  +      E  P ++ G +G+   A    A  VVTGIVGCAGL PT+AAI AGKD+A+ANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW   +++
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRLMALPADTRPEPLPHLVGGPEGLDVVASWDSADLVVTGIVGCAGLLPTLAAIRAGKDLAVANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWSDTARLSTGVPTPGLRRIQLTASGGAFRDWSAADLE 207          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.098e-50
Identity = 108/200 (54.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:  258 VLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE---ALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNMKN 812
            +LGSTGSIGTQTL I  E  ++F VVAL AG N+ LL  Q++R +P++VA+ N  LL E+++   AL    ++P+++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW   +++N
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRLDALGTDRKRPQLVGGPDGLNIAASWESADLVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRRIQLTASGGAFRDWKAEDLEN 200          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.578e-50
Identity = 109/205 (53.17%), Postives = 138/205 (67.32%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNM 806
            K ISVLGSTGSIGTQTL I  E  D+F +VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+Q            G+P    + I LTASGGAFRDW   ++
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSKILKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQGTPWADNARLSTGVPTPGFKSIQLTASGGAFRDWKAEDL 206          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.971e-50
Identity = 108/205 (52.68%), Postives = 138/205 (67.32%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNM 806
            K ISVLGSTGSIGTQTL I  E  ++F +VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+Q            G+P    + I LTASGGAFRDW   ++
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKKIVKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQGTPWADNARLSTGMPTPGFKSIQLTASGGAFRDWKAEDL 206          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.956e-49
Identity = 106/202 (52.48%), Postives = 141/202 (69.80%), Query Frame = 3
Query:  258 VLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNMK 809
            +LGSTGSIGTQTL+I  E  ++F VVAL AG+N++L+ +Q++R  P+VVA+ + SLL E+K+ L  +  +      P++LAG +G+  AA    A  VV+GIVGCAGL PT+AAI+AGKD+ALANKETLIA  P VLP   +   ++LPADSEHSAIFQC+Q            G+P   LR I LTASGGAFRDW  ++++
Sbjct:    1 MLGSTGSIGTQTLEIAEEFPERFRVVALTAGTNVSLVVEQIQRHHPEVVALADASLLPELKQQLNALPSEQQPPHLPQLLAGPEGLNVAASWDSADLVVSGIVGCAGLLPTLAAIKAGKDLALANKETLIAAAPVVLPELKRSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRHIQLTASGGAFRDWSAKDLE 202          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus GN=dxr PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.151e-48
Identity = 108/205 (52.68%), Postives = 138/205 (67.32%), Query Frame = 3
Query:  258 VLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            +LGSTGSIGTQTL+I  E  ++F VVAL AG N+ LL  Q++  +P+VVA+  + +L E++E L ++  K      P ++AG  G+  AA    A  VVTGIVGCAGL PT+AAI+AGKDIALANKETLIA GP V+P   +   ++LPADSEHSAIFQC+Q            G+P   LR I LTASGGAFRDW   ++K+ S
Sbjct:    1 MLGSTGSIGTQTLEIAKECPEQFKVVALTAGRNLDLLIKQIQEHQPEVVALARKDILPELQERLNSLTGKERPNALPHLVAGNDGLNIAASWHSADLVVTGIVGCAGLLPTLAAIKAGKDIALANKETLIAAGPVVIPELKRSGSRLLPADSEHSAIFQCLQGTPWPENARLSTGIPTPGLRNIQLTASGGAFRDWATEDLKHAS 205          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_PROMP2.927e-5254.731-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS96.521e-5254.851-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM56.521e-5254.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNSC1.897e-5155.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS37.210e-5154.371-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX2.098e-5054.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM13.578e-5053.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT7.971e-5052.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM3.956e-4952.481-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMA1.151e-4852.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
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