EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.325e-41
Identity = 87/191 (45.55%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+  A ++ +KILP DSEHSAIFQ +QG     + +I+LTASGG FR + + ++K+++
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSQGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVMREAKENGVKILPVDSEHSAIFQSLQGNAHNKIDKILLTASGGPFRGFTIEDLKSVT 192          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_GEOSM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp. (strain M21) GN=dxr PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.036e-41
Identity = 87/182 (47.80%), Postives = 119/182 (65.38%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDW 791
            K +++LGSTGSIG  TLD+VA + D F VVAL AG+N+ LL  Q++ F+P++V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +  +  +K+ P DSEH A+FQ + G     + R+ILTASGG F +W
Sbjct:    2 KNLTILGSTGSIGVSTLDVVAAYPDMFRVVALTAGNNLELLKTQIETFRPELVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQMVREKKVKLYPVDSEHCAVFQSMAGHRSQDIARVILTASGGPFLNW 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CHLCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=dxr PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.036e-41
Identity = 91/191 (47.64%), Postives = 120/191 (62.83%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            + +S+LGSTGSIG  TLD+V +H D+F +V LA G ++  LA Q++ FKP  V+VR+     +++E L     KPE+  G  G    A       VV+ IVG AGL+PTVAAI+AGK IALANKETL+  G  V  L  +H + +LP DSEHSAIFQ + G     + RIILTASGG FR      +K ++
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHRDRFTIVGLAEGHDVAALAAQIEEFKPLAVSVRDAESAKKLQELLG--AHKPEVYYGLDGAATIAALDGVDMVVSAIVGAAGLRPTVAAIKAGKHIALANKETLVVAGELVSRLVAEHKVHLLPVDSEHSAIFQSLAGHRAEDVERIILTASGGPFRKTSAEELKQVT 190          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus clausii (strain KSM-K16) GN=dxr PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.036e-41
Identity = 85/181 (46.96%), Postives = 129/181 (71.27%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRD 788
            K IS+LGSTGSIGTQTLD++ ++ D+F + ALA G+N+ L  +Q+K F+P++V+V+     ++ +       +  E L GE+G+ E AR+ ++  VVT I G  GL PT++AI+A K +A+ANKETL++ G  V+  A ++++ ++P DSEHSAIFQ + G P+ A+ R+ILTASGG+FRD
Sbjct:    2 KQISLLGSTGSIGTQTLDVIRDYPDQFTLSALACGTNLELCRNQIKEFQPKLVSVQRP---EDAQTLAGEFGDSIEFLYGEEGLKEVARYSESDIVVTAITGSIGLLPTLSAIKAKKAVAIANKETLVSAGHLVVSAAKENDVPLIPVDSEHSAIFQALNGEPKKAVDRLILTASGGSFRD 179          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PELPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelobacter propionicus (strain DSM 2379) GN=dxr PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.179e-41
Identity = 90/179 (50.28%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAF 782
            K +S+LGSTGSIG  TL+IVA H D+F V AL AG N+ LLA Q+++F P++ AV  +  +  + +    +E K  I+ G +G+IEAA   +   VV  IVG AGL PT AAI AGKDIALANKETL+  G   + +   H +K+ P DSEHSAIFQ ++G     + +IILTASGG F
Sbjct:    2 KQLSILGSTGSIGVSTLEIVAAHPDRFRVSALTAGKNLELLARQIRQFSPRIAAVAAKEDVPRLAQLCDGLEVK--IVGGVEGLIEAATADETDMVVAAIVGAAGLVPTAAAIRAGKDIALANKETLVTAGHLFMEMVSSHGVKLYPVDSEHSAIFQSLEGHRSDDISKIILTASGGPF 178          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_DESRM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotomaculum reducens (strain MI-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.179e-41
Identity = 93/191 (48.69%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K IS+LGSTGSIG QTL++V    ++  VVALAAG N  L  +Q K +KP +V+++ E     +KE L   + +PEI  G  G++  A   +AV VVT + G  GL PT AAI+A K IALANKETL+A G +V  LA ++ ++ILP DSEHSAI+QC+ G    A+R+I LTASGG FR    + ++N++
Sbjct:    3 KQISILGSTGSIGRQTLEVVNSFPEELNVVALAAGRNRELFLEQCKAYKPLLVSLQLEEDALWLKEHLIKEKLRPEIRYGLDGLVAVATCHEAVVVVTALSGAIGLVPTCAAIKASKKIALANKETLVAAGQYVTKLAEEYKVEILPVDSEHSAIWQCLHGENRSAIRKIQLTASGGPFRQLNRQELENVT 193          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CHLPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dxr PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.833e-41
Identity = 86/191 (45.03%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            + +S+LGSTGSIG  TLD+V +H ++F +  LA G ++ +L  Q++ F P++V+VRN     E+   L N  EKPEI  G +G    A    A  VV+ IVG AGL PT++AI+AGK+IALANKET++  G  V  LA +H + I+P DSEHSAI+Q + G     + R+ILTASGG F +     ++ ++
Sbjct:    2 RSLSILGSTGSIGLSTLDVVRQHPEQFTITGLAEGHDVGMLVKQIREFNPRLVSVRNADAAAELASLLGN--EKPEIFYGIEGAATVAAADGADMVVSAIVGAAGLVPTISAIKAGKNIALANKETMVVAGRLVTDLARQHKVTIIPVDSEHSAIYQSLLGHRHEDVLRLILTASGGPFLNTSAEELREVT 190          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PELTS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxr PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.507e-40
Identity = 87/191 (45.55%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I ++GSTGSIG QTL+++    D+F VV L +G N  L+A+Q++ F+P  VA+  E  +  +KE LA     PE+  G  G+   A  P+A  VV  + G AG+ PT+AAI+AGKD+ALANKETL+A G  V+ +A +H   ILP DSEHSA++QC+ G     + +IILTASGG FR+  +  ++ ++
Sbjct:    2 KNIVLIGSTGSIGRQTLEVIGSLPDRFKVVGLGSGKNWRLMAEQIRVFRPSAVAMAGEREIMNLKELLAG-SYCPELGWGRTGMESLASMPEADLVVVAVTGFAGIYPTIAAIQAGKDVALANKETLVAAGHLVMKMAERHRAAILPVDSEHSAVWQCLCGRNSGEVEKIILTASGGPFREMCLEKLEKVT 191          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_DESHY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain Y51) GN=dxr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.570e-40
Identity = 88/191 (46.07%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKP+++ +  E    E+K+ +A+++   E+++G +G++         TVVT I G  GL+PT+ A++ GKDIALANKETL+AGG  V+  A +    ILP DSEHSAIFQC++  P   L +IILTASGG FR W    ++ ++
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPRIIGLMEEKAARELKQRVADLDI--EVVSGMEGLLRTVTDEVPDTVVTAISGRIGLEPTMEALKVGKDIALANKETLVAGGDLVMGTAQRLGRTILPVDSEHSAIFQCLEEDPR-TLDKIILTASGGPFRGWSEEQLQEVT 189          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_SACD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.384e-40
Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 3
Query:  252 ISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----QGLPEVALRRIILTASGGAFRDWPVRNM 806
            I VLGSTGSIG  TLD++A H DKF V AL A S+I LL +Q  +F PQ   +R+E+L   +K+ + ++    E+LAGEQ + + A      +V+  IVG AGL PT+AA+EAGK + LANKE+L+  G   +  A   +  +LP DSEH+AIFQC+      L +  +++I+LT SGG FRD P+ ++
Sbjct:    4 ICVLGSTGSIGISTLDVLASHPDKFSVYALTANSSIDLLVEQCLKFSPQYAVIRDEALYLPLKQRIESLNCTTEVLAGEQALCDVASAVQVDSVMAAIVGAAGLAPTLAAVEAGKRVLLANKESLVMSGKLFMQAAKAASALVLPIDSEHNAIFQCLPQPYTSLADAGVQKILLTGSGGPFRDTPLADL 192          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_CLOP12.325e-4145.551-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSM3.036e-4147.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLCH3.036e-4147.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSK3.036e-4146.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELPD5.179e-4150.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESRM5.179e-4148.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPD8.833e-4145.031-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELTS1.507e-4045.551-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESHY2.570e-4046.071-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SACD24.384e-4045.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
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