EY660237

Overview
NameEY660237
Unique NameEY660237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGA3_MOUSE (Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 45/178 (25.28%), Postives = 79/178 (44.38%), Query Frame = 2 
Query:  167 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRI 700
            K +Y ++W  +TL+T G    P     E +F +   L G+++F  ++GN+   +  + A + + Q     ++ +M               +    WA     DE E++K+LP+ L+  I   + LD LKKV +F             ++RP VFS    I ++ D    M  I  G++
Sbjct:  292 KYIYSLYWSTLTLTTIGETPPPVKDE-EYLFVVIDFLVGILIFATIVGNVGSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGREMYIIKEGKL 468
[Close]
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGA3_HUMAN (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 45/178 (25.28%), Postives = 78/178 (43.82%), Query Frame = 2 
Query:  167 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRI 700
            K +Y ++W  +TL+T G    P     E +F +   L G+++F  ++GN+   +  + A + + Q     ++ +M               +    WA     DE E++K LP+ L+  I   + LD LKKV +F             ++RP VFS    I ++ D    M  I  G++
Sbjct:  351 KYIYSLYWSTLTLTTIGETPPPVKDE-EYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKL 527
The following BLAST results are available for this feature:
BLAST of EY660237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CNGA3_MOUSE6.213e-1125.28Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
CNGA3_HUMAN6.213e-1125.28Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660237 ID=EY660237; Name=EY660237; organism=Citrus sinensis; type=EST; length=954bp
CACTGGTACGCCTGCGGAACCCGTCCAGAANTCTTTCTCGACGCGGGTGT
ACGTAACACAACCTTCCTGTAGGGAGGTTTTTGNGCTTAGATGTTAATGG
GCCCTTCCATTATGGANCTGANCCCTGAAAAATAAGTTTGTNATTTCTAG
CAACTCTGTTGCCGTAAAAATCCTTTATCCAATCTTTTGGGGCCTCATGA
CTCTCAGCACTTTTGGCAATGATCTTGAGCCTACAAGTCACTGGCTTGAA
GTAATGTTCAGCATATGCATTGTACTCAGTGGACTAATGCTCTTCACTCT
GTTGATTGGTAACATTCAGGTGTTTTTGCATGCTGTAATGGCAAAGAAGC
GAAAGATGCAGCTGTGGTGCCGGGACATGGAATGGTGGATGAGGCGGAGG
CAGCTGCCGTCGCGTTTGAGACAGAGAGTTCGCCATTATGAGCGTCAAAG
ATGGGCAACAATGGGAGGAGAAGATGAGATGGAACTGATCAAAGACTTGC
CGGAAGGGCTGAGGCGTGGCATTAAACGCTATCTCTGCCTTGATCTCCTA
AAAAAGGTACCTTTGTTCCCCAACCTGGATGATCTCATTCTTGACAACAT
ATGTGACAGAGTTAGGCCCCTTGTATTCTCTAAAGATGGAAAGATCATCC
GAGAAAGGGATCCTGTGGCAAGAATGTTGTTCATTGTTCGTGGACGGATT
AAACGTTGCCACAGCCCTAGCAAAGGCTGGTACCCACCAATGTGGTTTGA
CCACGAAGGTTCCTGGGGGATGAGTGCTTTCTTGGGGCCTCGGCCCCCCT
TTACTTTTGGGTGGCCACCTTCTCTCGCAAATTTGGTTGTTTGGATCCCT
TAAACCTTTTGGGGGTTTCGCAAAAAACCTCCCTCCTTCCCAGTCATTTC
CGGGACAAATTGGTCCCCGAAGGGGGAAGAGACCGCGGAGATTCTTCCCC
AATT
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