EY660190

Overview
NameEY660190
Unique NameEY660190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.784e-59
Identity = 127/211 (60.19%), Postives = 154/211 (72.99%), Query Frame = 1
Query:  235 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L    HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ L     V   SAT LP      E++E   K
Sbjct:   26 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT-LPH-----EILEMTNK 230          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 5.784e-59
Identity = 127/211 (60.19%), Postives = 154/211 (72.99%), Query Frame = 1
Query:  235 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L    HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ L     V   SAT LP      E++E   K
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT-LPH-----EILEMTNK 231          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 228.024 bits (580), Expect = 5.784e-59
Identity = 127/211 (60.19%), Postives = 154/211 (72.99%), Query Frame = 1
Query:  235 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L    HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ L     V   SAT LP      E++E   K
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT-LPH-----EILEMTNK 231          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.784e-59
Identity = 127/211 (60.19%), Postives = 154/211 (72.99%), Query Frame = 1
Query:  235 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L    HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ L     V   SAT LP      E++E   K
Sbjct:   28 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT-LPH-----EILEMTNK 232          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.871e-58
Identity = 122/203 (60.10%), Postives = 150/203 (73.89%), Query Frame = 1
Query:  256 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            +V  +FDAMGL+E+LLRGIYAY FEKPSAIQQR I+P  +G DVI QAQSGTGKTATF   +LQ +D  L + QALVL+PTRELA QI+ V+ ALGDYL V+ HAC+GGTSV ED R L    H+V GTPGRV+DM+RR+ LR   IKM +LDE+DE+L+ GFKDQIYD+++ L     V   SAT LP+     +V+E   K
Sbjct:   21 KVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVVLLSAT-LPQ-----DVLEMTSK 217          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 6.395e-58
Identity = 125/211 (59.24%), Postives = 152/211 (72.04%), Query Frame = 1
Query:  235 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAP RELA QI+K +  LGDY+ V+ HAC+GGT+V ED R L    HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ L     V   SAT LP      E++E   K
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT-LPH-----EILEMTNK 231          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.425e-57
Identity = 116/185 (62.70%), Postives = 142/185 (76.76%), Query Frame = 1
Query:  259 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSAT 813
            V  +F+A+ L+E+LLRGIYAY FEKPSAIQQR I+P  +G DVI QAQSGTGKTATF   +LQ +D  L + QALVL+PTRELA QI+ V+ ALGDY+ V  HAC+GGTSV ED R L+A   VV GTPGRVFDM+RR++LR   IKM +LDE+DE+L++GFKDQIYDI++ L     V   SAT
Sbjct:   21 VAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSAT 205          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.414e-57
Identity = 117/221 (52.94%), Postives = 152/221 (68.78%), Query Frame = 1
Query:  208 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKE-VMEQPGKI 867
            + + + +  +  T+YD++   FD + L+E LLRGIY YGF  PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGT  RED   L+A   +VVGTPGRVFDM+ R++ + D+IKMF+LDEADEMLS GFK+QIY IF +L     V   SAT   E  D  +  M +P +I
Sbjct:    3 DSITNPENSEIQTNYDKIVHKFDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTTQVVLLSATMPKEVLDVTDKFMNKPVRI 223          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.235e-57
Identity = 115/203 (56.65%), Postives = 147/203 (72.41%), Query Frame = 1
Query:  256 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSATWLPEP*DYKEVMEQPGK 864
            EV  SFD MG++E+LLRGIYAYGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D  + + QAL+L+PTRELA Q E+VM A+GDY+ ++VHAC+GG S+ ED R L+   HVV GTPGRV DM++R++LR   IK+ +LDEADEML RGFKDQIYD+++ L   + V   SAT LP      E++E   K
Sbjct:   28 EVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISAT-LPH-----EILEMTSK 224          
BLAST of EY660190 vs. ExPASy Swiss-Prot
Match: FAL1_SCLS1 (ATP-dependent RNA helicase fal1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=fal1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.235e-57
Identity = 120/211 (56.87%), Postives = 149/211 (70.62%), Query Frame = 1
Query:  184 ARQYDTKMNELLSTDGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAECHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLSA*VXVGGFSAT 813
            A   D KM+     D  +F TS D  V  +F  M L+ENLLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   +LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT+V ED R L    H+V GTPGRV DM+RR++LR  +IKM VLDEADE+L+RGF++QIYD+++ L     V   SAT
Sbjct:    2 AEGIDRKMD-----DRMEFTTSADVTVAPTFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT 207          
The following BLAST results are available for this feature:
BLAST of EY660190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_TAEGU5.784e-5960.19Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_MOUSE5.784e-5960.19Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_HUMAN5.784e-5960.19Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
IF4A3_CHICK5.784e-5960.19Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
FAL1_USTMA2.871e-5860.10ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_MACFA6.395e-5859.24Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
FAL1_CRYNE1.425e-5762.70ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
IF4A_ASHGO5.414e-5752.94ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
RH34_ORYSJ9.235e-5756.65DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
FAL1_SCLS19.235e-5756.87ATP-dependent RNA helicase fal1 OS=Sclerotinia scl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660190 ID=EY660190; Name=EY660190; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCACGGCGCAGATCCGAGGAGTTTGGTAACCCTAGCAAC
TATTTTCTCTTAAATCAATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAAC
CAACTCTTTCTCTCGATTTTAATCACCATCATCAAAGCTTTGCAGATATG
GCTGGTTTGGCACCCGAAGGATCTCAATTTGATGCTCGTCAGTATGACAC
CAAGATGAATGAACTGCTCTCTACTGATGGGCAAGATTTCTTCACTTCTT
ATGATGAAGTTTATGACAGTTTTGATGCAATGGGACTGCAGGAAAACCTT
TTGAGGGGAATCTATGCCTATGGGTTTGAGAAGCCCTCTGCTATTCAGCA
AAGGGGAATTGTTCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTC
AGTCTGGAACTGGGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAA
CTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACCCACTAG
GGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTGATTATC
TTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGCGAGGAT
CAGCGCATTCTTCAAGCTGAGTGTCATGTTGTTGTTGGCACTCCTGGTCG
TGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACATTAAGA
TGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAGGAT
CAGATCTATGATATTTTCCAGCTGCTTTCAGCTTAAGTTCANGTGGGGGG
TTTCTCTGCTACATGGCTCCCTGAGCCTTGAGATTACAAGGAAGTTATGG
AACAGCCTGGGAAAATCTGGNTAACCGGATGAACTCCCCCTGAGGGATCA
GCAATTTATGTC
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