EY660178

Overview
NameEY660178
Unique NameEY660178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPH-------RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            T   R S+P  G  ++         R R   + L+EI+  QKST+LL RK PF  +VREI + F    D  +Q+ A+LALQEAAEA+L+ LFED  L ++HA RVT+ PKDIQ
Sbjct:    9 TPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQ 121
The following BLAST results are available for this feature:
BLAST of EY660178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
CENPA_MOUSE2.041e-1746.90Histone H3-like centromeric protein A OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660178 ID=EY660178; Name=EY660178; organism=Citrus sinensis; type=EST; length=697bp
CCACGCGTCCGACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGT
GTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAAT
TCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCC
AGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTC
CAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGT
TGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCA
CTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGT
GCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGG
GGGCAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGGGTAGA
TAGGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTTGTCATCATCTG
GGTTTGTTTTTGGTGGTGTTTTATAATGTCTATTTGTTGATGATGGGGAT
TTTAATTCGCCATAAGAGACTGGCTTTTATGTGTTCTTTTGGATATCTGT
TGCCACAGTAGTGGTGGTGTTGAACATCTCTATTATTGTGCATCTAATCT
AAGTTTAGTTTGGTTCAAACGAAACGAAGAAAAAAGAAAGCTTAAAG
back to top