EY660178

Overview
NameEY660178
Unique NameEY660178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTIMPKDIQ
Sbjct:   23 TKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQ 125          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 3
Query:   12 TKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQ 127          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.393e-47
Identity = 93/101 (92.08%), Postives = 97/101 (96.04%), Query Frame = 3
Query:   21 ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            ARK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   25 ARKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.393e-47
Identity = 94/103 (91.26%), Postives = 98/103 (95.15%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 320
            TKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:   23 TKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.602e-46
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            +KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQ
Sbjct:   23 SKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQ 126          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 2.093e-46
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 320
            TKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:   23 TKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.733e-46
Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            +KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+Q
Sbjct:   23 SKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQ 126          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46
Identity = 92/104 (88.46%), Postives = 99/104 (95.19%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            +KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KD+Q
Sbjct:   23 SKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQ 126          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 7.952e-46
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 3
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 320
            TKAARKSAP  GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:   23 TKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 3
Query:   15 KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            K+ARK+A TT G+KKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQ+FK DLRFQS AVLALQEAAEAYLV LFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:   24 KSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQ 126          
The following BLAST results are available for this feature:
BLAST of EY660178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H33_CHLRE1.893e-4794.23Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H33B_LILLO2.472e-4791.43Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3_MASBA9.393e-4792.08Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H32_USTMA9.393e-4791.26Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_LODEL1.602e-4689.42Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MORAP2.093e-4691.26Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_SCHPO2.733e-4688.46Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H31_CANAL3.569e-4688.46Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H31_USTMA7.952e-4690.29Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]
H3_EUPCR1.039e-4589.32Histone H3 OS=Euplotes crassus PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660178 ID=EY660178; Name=EY660178; organism=Citrus sinensis; type=EST; length=697bp
CCACGCGTCCGACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGT
GTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAAT
TCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCC
AGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTC
CAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGT
TGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCA
CTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGT
GCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGG
GGGCAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGGGTAGA
TAGGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTTGTCATCATCTG
GGTTTGTTTTTGGTGGTGTTTTATAATGTCTATTTGTTGATGATGGGGAT
TTTAATTCGCCATAAGAGACTGGCTTTTATGTGTTCTTTTGGATATCTGT
TGCCACAGTAGTGGTGGTGTTGAACATCTCTATTATTGTGCATCTAATCT
AAGTTTAGTTTGGTTCAAACGAAACGAAGAAAAAAGAAAGCTTAAAG
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