EY660094

Overview
NameEY660094
Unique NameEY660094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660094 vs. ExPASy Swiss-Prot
Match: ERD23_HUMAN (ER lumen protein retaining receptor 3 OS=Homo sapiens GN=KDELR3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.512e-16
Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  245 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 745
            N+F +  +  H + + +L+ K+ + K C G+S KSQ L A+    R    F     I+            +V +YMI    R ++  + D F + +++VP   L+ L + S +   L  I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L  A+W+
Sbjct:    2 NVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYNTVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFT---LLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWI 167          
BLAST of EY660094 vs. ExPASy Swiss-Prot
Match: ERD2_KLULA (ER lumen protein retaining receptor OS=Kluyveromyces lactis GN=ERD2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.381e-12
Identity = 52/176 (29.55%), Postives = 93/176 (52.84%), Query Frame = 2
Query:  245 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQEL-TAIFLA--VRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIR---FNLRSSYME--DKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 745
            N+F +A +  H   I +LI  +    +  G+SLK+Q L T +F+   + L+  +   Y+              +VI ++R   F    +Y +   +D F I +++VPC +L L+ +   S     +I W+F ++LE+V++LPQL ++  T   +  T+HY+FALG+ R L   +W+
Sbjct:    3 NVFRIAGDFSHLASIIILIQSITTSNSVDGISLKTQLLYTLVFITRYLNLFTKWTSLYNF--LMKIVFISSSVYVIVLMRQQKFKNPVAYQDMITRDQFKIKFLIVPCILLGLIFNYRFS---FIQICWSFSLWLESVAILPQLFMLTKTGKAKQLTSHYIFALGLYRALYIPNWI 173          
The following BLAST results are available for this feature:
BLAST of EY660094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD23_HUMAN3.512e-1631.36ER lumen protein retaining receptor 3 OS=Homo sapi... [more]
ERD2_KLULA1.381e-1229.55ER lumen protein retaining receptor OS=Kluyveromyc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660094 ID=EY660094; Name=EY660094; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCCCAATCGGATACTCAATTGTCTCGCTCTCTCTAAATTA
CATCTCACTTTCTCGCACTTTCTCGCACTTTCCGGGAAAATATTTTTAGA
CCGCTCATGAGGGCGCCGAAGAGGCCGATCCACGCGGTTTCGACATGGGT
CCGGCGACAGCCGCCGAAAGTGAAGGCATTTTTGGCGGTGGTCTCCGGCA
TGGCAGCGCTGGTTTTGCTCCGATTCATTGTACACGACCACGATAACCTC
TTCGTTGCTGCCGAGGCCGTGCACTCCATTGGAATCTCCGTGTTAATATA
CAAGCTCATGAAAGAGAAAACTTGTGCTGGACTGTCACTCAAATCCCAGG
AACTAACAGCTATTTTCTTAGCTGTGAGGCTATACTGTAGTTTTGTGATG
GAATACGATATACACACCCTACTGGATTTAGCTACTTTGGCTACGACCCT
TTGGGTTATTTATATGATCCGTTTCAATCTAAGGTCTAGTTACATGGAGG
ACAAGGACAACTTTGCAATATATTATGTGGTGGTACCCTGTGCAGTATTG
GCTCTGTTAATTCATCCATCGACTTCGCATAATATATTGAATAGAATTTT
CTGGGCATTCTGCGTTTATCTGGAAGCTGTTTCAGTACTGCCCCAGTTGC
GGGTGATGCAGAACACAAAGATTGTTGAACCATTCACAGCCCATTATGTA
TTTGCGCTTGGTGTTGCGAGGTTTTTGAGCTGTGCCCACTGGGTTCTCCC
AGATCTGGATAGCCGTGGACACTTGCTGGTAGCCCTGGGCTATGGATTGT
GGCCTTCGATGGTGCTTATCTCCGAGATTGTCCAAACTTCATCTTAGCGG
ACTTTCGTAATACTATGGCAAAAGGGCCTTGGCGGAAAGCTAATCCTCCG
ACTTCCT
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