EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA2_HAHCH (Serine hydroxymethyltransferase 2 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.155e-56
Identity = 118/234 (50.43%), Postives = 152/234 (64.96%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            T+ Q + +ELI SEN+TS  VM+A GS +TNKY+EGYP  RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +N  VY AL KP D I+ + L HGGHL+HG       +S     ++ + Y LN  TG IDY+++ K A   +PK+IVAG SAY+R+ D+ER R + ++  A +  DMAHI+GLVAAGV PSP + ADV TTTTHK+L GPRG +I  +   E
Sbjct:   23 TQRQEEHIELIASENYTSPRVMEAQGSALTNKYAEGYPNKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANAAVYMALCKPGDVILGMSLAHGGHLTHG-----ASVSFSGRIYKAVQYGLNPETGEIDYEEVAKLARENKPKMIVAGFSAYSRVIDWERFRAIADEVGAYLFVDMAHIAGLVAAGVYPSPVQIADVTTTTTHKTLGGPRGGLILAKANEE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA2_PSE14 (Serine hydroxymethyltransferase 2 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 112/227 (49.34%), Postives = 152/227 (66.96%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E L  +RA + F  D      NVQ  SGS +N  VY ALL+  D ++ + L HGGHL+HG      K+S     +  + Y ++ +TG IDYD++E+ A   +PK+I+AG SAY++  D+ R R++ +K  A +  DMAH++GLVAAG+ P+P  YADVVTTTTHK+LRGPRG +I  +   E
Sbjct:   30 IELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEQLAIERAKQLFGADY----ANVQPHSGSQANAAVYLALLQAGDTVLGMSLAHGGHLTHG-----AKVSFSGKLYNAVQYGIDTTTGLIDYDEVERIAVECQPKMIIAGFSAYSKTLDFPRFREIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLILAKANEE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEU2 (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 121/259 (46.72%), Postives = 163/259 (62.93%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL+  D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD++E+ A   +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R   E           I KK  S+    + GGP
Sbjct:   26 QEEHIELIASENYTSPAVMEAQGSALTNKYAEGYPGKRYYGGCEYVDIIEQLAIDRAKELFGADY----ANVQPHAGSQANSAVYLALLQGGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAVQYGI-DANGMIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANAE-----------IEKKLNSAVFPGSQGGP 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_PSE14 (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.508e-56
Identity = 121/259 (46.72%), Postives = 163/259 (62.93%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL+  D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD++E+ A   +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R   E           I KK  S+    + GGP
Sbjct:   26 QEEHIELIASENYTSPAVMEAQGSALTNKYAEGYPGKRYYGGCEYVDVIEQLAIDRAKELFGADY----ANVQPHAGSQANSAVYLALLQGGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAVQYGI-DANGMIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANAE-----------IEKKLNSAVFPGSQGGP 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.970e-56
Identity = 117/231 (50.65%), Postives = 155/231 (67.10%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T+ Q +GLELI SENF S +VM+AVGSV+TNKY+EGYPG RYYGG E +D+AE+L   RA + F  D     VNVQ+ SGS +N   + AL+KP D +++LDL  GGHL+HG        +     ++ + Y L   T  ID+ Q+E  A   +PK+IV GASAY R  D+ + R++ +   A ML DMAHI+GLVAAGV PSP   AD+VT+TTHK+LRGPRG ++  R+
Sbjct:   22 TQRQEEGLELIASENFVSPAVMEAVGSVLTNKYAEGYPGKRYYGGCEVVDVAENLAIARAKDLFGAD----AVNVQAHSGSQANMGAFMALMKPGDTMLSLDLNSGGHLTHG-----ATFNFSGKLYKVVHYGLTRDTETIDFAQVESLAKEHKPKVIVVGASAYPRTLDFAKFREIADAVGAAMLVDMAHIAGLVAAGVHPSPVPVADIVTSTTHKTLRGPRGGLVLSRE 243          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_METAC (Serine hydroxymethyltransferase OS=Methanosarcina acetivorans GN=glyA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.970e-56
Identity = 114/220 (51.82%), Postives = 153/220 (69.55%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            L LI SEN+ S +VM+A GS+MTNKY+EGY G RYYGG +++D+AE+L   RA E F        VNVQ  SGS +N  VY ++L+P D IM++DL HGGHLSHG       +S     +  +PY +++ T  +DYD+L K A   +PK+IV GASAY R+ D+++ R++ ++  A +LAD+AHI+GLV +GV PSP  YAD VTTTTHK+LRGPRG MI
Sbjct:   26 LNLIASENYASRAVMEAQGSIMTNKYAEGYSGKRYYGGCDFVDIAENLAIARAKEIFGAKY----VNVQPHSGSGANMAVYFSVLQPGDTIMSMDLSHGGHLSHG-----SPVSFSGKLYNIVPYGVSKETEALDYDELMKMAKECKPKMIVCGASAYPRVIDFKKFREIADEVGAYLLADIAHIAGLVVSGVHPSPVPYADFVTTTTHKTLRGPRGGMI 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DEHE1 (Serine hydroxymethyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.970e-56
Identity = 115/224 (51.34%), Postives = 146/224 (65.18%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            ++LI SEN+TS +V++A GSV TNKY+EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K +     +  + Y LN  T  IDYD LEK A   RP+LIV GASAY R+ D+ER R +C+K  A ++ D+AHI+GLVAAG+ PSP  YADVVT+T+HK+LRGPRG  I  ++
Sbjct:   26 IDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAIEELAIDRAKTLFHAEH----ANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKANFTGKLYHVIEYGLNAETERIDYDNLEKLALEHRPRLIVTGASAYPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFILCKE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPK (Serine hydroxymethyltransferase 2 OS=Pseudomonas putida (strain KT2440) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.970e-56
Identity = 121/259 (46.72%), Postives = 161/259 (62.16%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL   D I+ + L HGGHL+HG       +S+    +  + Y + +  G IDYD++E+ A   +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R   +           I KK  S+      GGP
Sbjct:   26 QEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAIQYGI-DGNGLIDYDEVERLAVEHKPKMIVAGFSAYSQVLDFARFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANAD-----------IEKKLNSAVFPGAQGGP 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.573e-56
Identity = 123/268 (45.90%), Postives = 167/268 (62.31%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            T  Q + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D +  R + +K  A ++AD+AH +GL+AAG++ +P  +   VTTTTHK+LRGPRG MI          G+   T  G    M+ +   +  +    GGP
Sbjct:   21 TGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCDY----VNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMYEAHSYGVDRETGCIDMNKVEELALQVRPKLIICGASAYSQGFDVKAFRVIADKVGAFLMADIAHPAGLIAAGLLGNPLPHCHFVTTTTHKTLRGPRGGMIMMGSDFENPMGITIKTKTGSRLKMMSEVMDAEVMPGIQGGP 279          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CELJU (Serine hydroxymethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.573e-56
Identity = 114/235 (48.51%), Postives = 157/235 (66.81%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            R Q + +ELI SEN+TS  VM A G+ +TNKY+EGYPG RYYGG EY+D +E+L  +RA + F  D      NVQ  SGS +N  VY AL  P D ++ + L HGGHL+HG      K++     +  + Y LN  TG +DYD++E+ A   +PK+IVAG SAY+++ D++R R + +K  A ++ DMAH++GLVAAG+ P+P + ADV T+TTHK+LRGPRG +I   K  EEI
Sbjct:   24 RRQEEHIELIASENYTSPLVMAAQGTKLTNKYAEGYPGKRYYGGCEYVDQSEALAIERAKQLFGADY----ANVQPHSGSQANTAVYAALCAPGDTVLGMSLAHGGHLTHG-----AKVNFSGKIYNAVQYGLNPETGLVDYDEVERLALEHKPKMIVAGFSAYSQVLDWQRFRDIADKVGAYLMVDMAHVAGLVAAGLYPNPVQIADVTTSTTHKTLRGPRGGII-LAKANEEI 248          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA2_HAHCH1.155e-5650.43Serine hydroxymethyltransferase 2 OS=Hahella cheju... [more]
GLYA2_PSE141.508e-5649.34Serine hydroxymethyltransferase 2 OS=Pseudomonas s... [more]
GLYA1_PSEU21.508e-5646.72Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA1_PSE141.508e-5646.72Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA_MYXXD1.970e-5650.65Serine hydroxymethyltransferase OS=Myxococcus xant... [more]
GLYA_METAC1.970e-5651.82Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_DEHE11.970e-5651.34Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA2_PSEPK1.970e-5646.72Serine hydroxymethyltransferase 2 OS=Pseudomonas p... [more]
GLYA_PELPB2.573e-5645.90Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_CELJU2.573e-5648.51Serine hydroxymethyltransferase OS=Cellvibrio japo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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