EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFM (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M12) GN=glyA PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 111/226 (49.12%), Postives = 147/226 (65.04%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            R Q   +ELI SEN+ S  VMQ  GS +TNKY+EGY G RYYGG EY+D+AE L  +RA + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG       ++     F  + Y +N + G IDY+ +E  A   RPK++VAG SAY++  D+ R R + ++  A +L DMAH++GLVAAGV P+P  +A VVT+TTHK+LRGPRG +I
Sbjct:   24 RRQEDHVELIASENYCSTLVMQVQGSQLTNKYAEGYSGKRYYGGCEYVDIAEQLAIERAKQLFGADY----ANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----ANVNVSGKLFNAVQYGVN-AQGLIDYEAVESLALEHRPKMVVAGFSAYSQKIDWVRFRAIADQVGAYLLVDMAHVAGLVAAGVYPNPLPHAHVVTSTTHKTLRGPRGGII 239          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SILPO (Serine hydroxymethyltransferase OS=Silicibacter pomeroyi GN=glyA1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 110/220 (50.00%), Postives = 142/220 (64.55%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            +ELI SEN  S +VMQA GSVMTNKY+EGYPG RYYGG +Y+D+AE+L  +RA + F         NVQ  SGS +N  V+ AL+KP D I+ + L  GGHL+HG   +         +F  + Y + +    +DYDQ+E  A   RPKLI+AG SA  R  D+ R+R++ +   A +  DMAH +GLVAAG  PSPF +A V TTTTHK+LRGPRG MI
Sbjct:   37 IELIASENIVSAAVMQAQGSVMTNKYAEGYPGRRYYGGCQYVDIAENLAIERAKQLFGCG----FANVQPNSGSQANQGVFQALIKPGDTILGMSLDAGGHLTHGAAPNQS-----GKWFNAVQYGVRQQDNLLDYDQVEALAKEHRPKLIIAGGSAIPRQIDFARMREIADMVGAYLHVDMAHFAGLVAAGEHPSPFPHAHVATTTTHKTLRGPRGGMI 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 108/223 (48.43%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 692
            +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG E++D+AE L   R    F  +      NVQ   G+ +N  V+ A LKP D  M + L  GGHL+HG       ++    +F  + Y L+++   IDY+Q+E+ A   +PKLI+AGASAY++  D+ERI K+  +  AI + DMAH +GLVAAGV P+P  +AD+VT+TTHKSLRGPRG +I  +
Sbjct:   30 IELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEFVDVAEQLAIDRVKALFGAE----AANVQPHCGASANQAVFLAFLKPGDTFMGMSLAEGGHLTHGMA-----LNMSGKWFNPIAYGLDKNEE-IDYEQMERLAREHKPKLIIAGASAYSKKIDFERIGKLAKEVGAIFMVDMAHYAGLVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIILMK 242          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_JANSC (Serine hydroxymethyltransferase OS=Jannaschia sp. (strain CCS1) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 108/220 (49.09%), Postives = 143/220 (65.00%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            +ELI SEN  S +VM+A G VMTNKY+EGYPG RYYGG +Y+D+AE L   RA + F  D      NVQ  SGS +N  V+TALL+P D I+ + L  GGHL+HG + +         +F  + Y + E    IDYDQ+   A   +PK+I+AG SA  R+ D+ R+R++ +   A +L DMAH +G+VA+G  PSPF +A V TTTTHK+LRGPRG MI
Sbjct:   45 IELIASENIVSAAVMEAQGGVMTNKYAEGYPGRRYYGGCQYVDIAEELAIDRAKQLFGCD----FANVQPNSGSQANQGVFTALLQPGDTILGMSLDAGGHLTHGARPNQS-----GKWFNAVQYGVREGDLEIDYDQIAALAAEHKPKMIIAGGSAIPRIIDFARMREIADTIGAYLLVDMAHFAGMVASGHYPSPFPHAHVATTTTHKTLRGPRGGMI 255          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_IDILO (Serine hydroxymethyltransferase OS=Idiomarina loihiensis GN=glyA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 114/259 (44.02%), Postives = 156/259 (60.23%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYP  RYYGG E++D  E L  +RA E F         NVQ  SGS +N   + A+++  D  + + L HGGHL+HG       ++     +  + Y L+ESTG IDY ++EK A   +PK+IVAG SAY+ + D+ + R++ +K  A ++ DMAH++GLVAAGV P+P  YA VVTTTTHK+L GPRG +I            G +   + KK  S+      GGP
Sbjct:   26 QEQHIELIASENYTSPRVMQAQGSQLTNKYAEGYPHKRYYGGCEFVDKVEDLAIERAKELFGAKY----ANVQPHSGSQANTAAFMAMMEAGDTFLGMSLAHGGHLTHG-----SGVNFSGKLYNAVSYGLDESTGEIDYAEVEKLAQEHKPKVIVAGFSAYSGIVDWAKFREIADKVDAYLMVDMAHVAGLVAAGVYPNPVPYAHVVTTTTHKTLAGPRGGLII----------SGSDDEKLHKKLNSAVFPGNQGGP 265          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 107/228 (46.93%), Postives = 150/228 (65.79%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEE 707
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+D+AE + + RA + F        VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   I +  + Y + E    IDY+ + ++A   +PKLIVAGASAY R  D+++ R++ ++  A ++ DMAHI+GLVAAG+  +P  YA  VTTTTHK+LRGPRG MI   +   E
Sbjct:   26 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIAEDVARDRAKQLFGAAY----VNVQPHSGAQANMGVYFTILEHGDTVLGMNLSHGGHLTHG-----SPVNFSGIQYRFVEYGVREDDKRIDYEAVREAAKTHQPKLIVAGASAYPREIDFKKFREIADEVGAYLMVDMAHIAGLVAAGLHQNPVPYAHFVTTTTHKTLRGPRGGMILCNEETAE 244          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACCN (Serine hydroxymethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.557e-52
Identity = 107/239 (44.77%), Postives = 155/239 (64.85%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y ++  T  I+YD +   A   +PKLIVAGASAY R+ D++R R++ ++  A ++ DMAHI+GLVAAG+ P+P  +A  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   26 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAEH----VNVQPHSGAQANMAVYFTILEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDAETHRINYDDVLAKAKEHKPKLIVAGASAYPRVIDFKRFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEKFAKQIDKSIFPGIQ 255          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9311) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.564e-52
Identity = 110/223 (49.33%), Postives = 145/223 (65.02%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 692
            LELI SENFTS +VM+A GSV+TNKY+EG P  RYYGG E++D  E L   RA + F      W  NVQ  SG+ +NF V+ ALL+P D I+ +DL HGGHL+HG       ++    +F  + Y +++ T  +D + + K A   +PKLI+ G SAY R  D+   R + ++  A +LADMAHI+GLVAAGV  SP  + DVVTTTTHK+LRGPRG +I  R
Sbjct:   35 LELIASENFTSKAVMEAQGSVLTNKYAEGLPHKRYYGGCEHVDAIEELAITRAKQLFGA---AWA-NVQPHSGAQANFAVFLALLQPGDTILGMDLSHGGHLTHG-----SPVNVSGKWFNVVQYGVDKETQRLDMEAIRKLALEHKPKLIICGYSAYPRSIDFAAFRSIADEVGAYLLADMAHIAGLVAAGVHASPVPHCDVVTTTTHKTLRGPRGGLILCR 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPA (Serine hydroxymethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.564e-52
Identity = 106/236 (44.92%), Postives = 152/236 (64.41%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            TR Q + +ELI SEN+ S  V++A G+ +TNKY+EGYPG RYYGG E++D+ E L   RA E F         NVQ  SGS +N  V+ ALL+  D ++ + L HGGHL+HG       +S     +  + Y ++E+TG IDY ++E+ A   +PK+I+AG SAY+ + D+ + R++ +K  A +  DMAH++GLVAAG+ P+P  +A VVTTTTHK+L GPRG +I      E+I
Sbjct:   23 TRRQEEHIELIASENYCSPRVIEAQGTQLTNKYAEGYPGKRYYGGCEHVDIVEELAISRAKELFGATY----ANVQPHSGSQANAAVFMALLQGGDTVLGMSLAHGGHLTHG-----SHVSFSGKLYNAVQYGIDETTGQIDYAEVERLAVEHKPKMIIAGFSAYSGIIDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPMPHAHVVTTTTHKTLAGPRGGLILSSINDEDI 249          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.564e-52
Identity = 112/223 (50.22%), Postives = 142/223 (63.68%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 692
            +ELI SEN+TS +VM A GS +TNKY+EGYPG RYYGG EY+D+ E L   R  + F  +      NVQ  SGS +N  V+ A+LKP D IM + L  GGHL+HG       ++    +F  + Y LN     IDYD LE  A   +PKLI+AGASA+A   D+ERI K+     A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +
Sbjct:   31 IELIASENYTSPAVMAAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRVKQLFGAE----AANVQPNSGSQANQGVFFAVLKPGDTIMGMSLAEGGHLTHGMA-----LNMSGKWFNVVSYGLNAQED-IDYDALEALAQEKKPKLIIAGASAFALRIDFERIGKIAKSIGAYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMK 243          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_XYLFM6.557e-5249.12Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_SILPO6.557e-5250.00Serine hydroxymethyltransferase OS=Silicibacter po... [more]
GLYA_POLSQ6.557e-5248.43Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_JANSC6.557e-5249.09Serine hydroxymethyltransferase OS=Jannaschia sp. ... [more]
GLYA_IDILO6.557e-5244.02Serine hydroxymethyltransferase OS=Idiomarina loih... [more]
GLYA_BACSK6.557e-5246.93Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_BACCN6.557e-5244.77Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_SYNS38.564e-5249.33Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SHEPA8.564e-5244.92Serine hydroxymethyltransferase OS=Shewanella peal... [more]
GLYA_RALPJ8.564e-5250.22Serine hydroxymethyltransferase OS=Ralstonia picke... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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