EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJB (Serine hydroxymethyltransferase OS=Synechococcus sp. GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 110/223 (49.33%), Postives = 142/223 (63.68%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 692
            LE+I SENFTS +V+ A GSV+TNKY+EG PG RYYGG E+ID  E L   RA + F         NVQ  SG+ +NF V+ ALL+P D IM +DL HGGHL+HG       ++    +F  + Y ++  T  ID+DQ+   A   RPKLI+ G SAY R  D+   R + ++  A +LAD+AHI+GLVA G  P+P    DVVTTTTHK+LRGPRG +I  R
Sbjct:   26 LEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAAH----ANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFRVVHYGVHPQTERIDFDQVRDLALQHRPKLIICGYSAYPRAIDFAAFRTIADEVGAYLLADIAHIAGLVATGHHPNPVPLCDVVTTTTHKTLRGPRGGLILTR 239
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_FINM2 (Serine hydroxymethyltransferase OS=Finegoldia magna (strain ATCC 29328) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 104/228 (45.61%), Postives = 147/228 (64.47%), Query Frame = 3 
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q + +ELI SENF S +V++ +G+ +TNKY+EGYPG RYYGG E++D  E L   R  + F  D      NVQ   G+ +N  VY A+LKP D ++ + L  GGHL+HG       ++    F+  + Y ++  TG IDY+ + + A   +PKLIVAGASAY R+ D+++ R++ ++  A ++ DMAHI+GLVA G  PSP  YAD VTTTTHK+LRGPRG  I  ++
Sbjct:   26 QEEHIELIASENFVSKAVLETMGTELTNKYAEGYPGKRYYGGCEHVDKIEQLAIDRLKKLFNADH----ANVQPHCGANANIAVYVAVLKPGDTVLGMRLTEGGHLTHG-----SPVNMSGKFYNFVDYGVDPETGTIDYENVRELALKHKPKLIVAGASAYPRIIDFKKFREIADEVGAYLMVDMAHIAGLVATGDHPSPVPYADFVTTTTHKTLRGPRGGAILCKE 244
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CLOP1 (Serine hydroxymethyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 102/228 (44.74%), Postives = 151/228 (66.23%), Query Frame = 3 
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q   +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG   +D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+P D ++ +DL HGGHL+HG       ++     F  + Y +++ T  I+Y+ + + A   +PKLIVAGASAY+R+ D++ +R++ ++  A ++ D+AHI+GLVA G+ PSP  YAD VT+TTHK+LRGPRG +I  ++
Sbjct:   24 QENSIELIASENFVSKAVMEAMGSYLTNKYAEGYPSKRYYGGCHVVDEVEDLARERVKKLFGAEH----ANVQPHSGSQANMAVYFSILEPGDTVLGMDLSHGGHLTHG-----SPVNFSGRLFNFVSYGVDKETETINYETVRELALKHKPKLIVAGASAYSRIIDFKTLREIADEVGAYLMVDIAHIAGLVATGLHPSPVPYADFVTSTTHKTLRGPRGGLILCKE 242
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BUCBP (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 111/255 (43.53%), Postives = 160/255 (62.75%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            +ELI SEN+ S  VM+A GS +TNKY+EGYPG RYYGG +Y+D  E +  KRA + F  +      NVQ  SGS +N+ VY+ALLKP+D ++ + L HGGHL+HG       ++     ++ + Y L+ S G IDY Q+ K A  ++PK+IV G SAY+ + +++ +R++ ++  + +  DMAHISGLVAAG+ P+P +YA VVT+TTHK+L GPRG +I  +           +   + KK  SS      GGP
Sbjct:   30 IELIASENYVSSCVMEAQGSQLTNKYAEGYPGKRYYGGCDYVDAIEKIAIKRAKKLFNANY----ANVQPHSGSQANYAVYSALLKPNDIVLGMSLSHGGHLTHG-----SSVNFSGKLYKFISYGLDIS-GDIDYPQIRKLAHRYKPKMIVGGFSAYSGICNWKLLREIADEINSYLFVDMAHISGLVAAGLYPNPLKYAHVVTSTTHKTLSGPRGGLILAK----------GDNVSLFKKLNSSVFPGCQGGP 264
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BUCAI (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 103/225 (45.78%), Postives = 148/225 (65.78%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 698
            +ELI SEN+TS  VM   GS +TNKY+EGYPG RYYGG EY+D+ E L  +RA + F  D      NVQ  SGS +NF VYTALL P D I+ + L HGGHL+HG       ++     +  + Y ++E+ G I+Y++L +    ++PK+I+ G SAY+ + +++++R + +   A  + DMAH++GLVAAG+ P+P  YA VVT+TTHK+L GPRG +I  + G
Sbjct:   30 IELIASENYTSNYVMDVQGSQLTNKYAEGYPGKRYYGGCEYVDIIEELAIERAKKLFNADY----ANVQPHSGSQANFSVYTALLNPGDTILGMKLSHGGHLTHG-----SSVNFSGKMYNVISYGVDEN-GEINYEELLRLTKKYKPKMIIGGFSAYSGICNWKKMRFIADNADAYFVVDMAHVAGLVAAGIYPNPINYAHVVTSTTHKTLAGPRGGLILAKNG 244
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACHK (Serine hydroxymethyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 106/239 (44.35%), Postives = 155/239 (64.85%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y ++  +  I+YD +   A   +PKLIVAGASAY R+ D++R R++ ++  A ++ DMAHI+GLVAAG+ P+P  +A  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   27 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAEH----VNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPRVIDFKRFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEQFAKQIDKSIFPGIQ 256
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACCZ (Serine hydroxymethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 106/239 (44.35%), Postives = 155/239 (64.85%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y ++  +  I+YD +   A   +PKLIVAGASAY R+ D++R R++ ++  A ++ DMAHI+GLVAAG+ P+P  +A  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   27 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAEH----VNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPRVIDFKRFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEQFAKQIDKSIFPGIQ 256
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACCR (Serine hydroxymethyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 106/239 (44.35%), Postives = 155/239 (64.85%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y ++  +  I+YD +   A   +PKLIVAGASAY R+ D++R R++ ++  A ++ DMAHI+GLVAAG+ P+P  +A  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   27 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAEH----VNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDADSHRINYDDVLAKAKEHKPKLIVAGASAYPRVIDFKRFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEQFAKQIDKSIFPGIQ 256
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACCQ (Serine hydroxymethyltransferase OS=Bacillus cereus (strain Q1) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 106/239 (44.35%), Postives = 155/239 (64.85%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y ++  +  I+YD +   A   +PKLIVAGASAY R+ D++R R++ ++  A ++ DMAHI+GLVAAG+ P+P  +A  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   26 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAEH----VNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPRVIDFKRFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEQFAKQIDKSIFPGIQ 255
[Close]
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACC7 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain AH187) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 106/239 (44.35%), Postives = 155/239 (64.85%), Query Frame = 3 
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y ++  +  I+YD +   A   +PKLIVAGASAY R+ D++R R++ ++  A ++ DMAHI+GLVAAG+ P+P  +A  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   26 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAEH----VNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPRVIDFKRFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEQFAKQIDKSIFPGIQ 255
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SYNJB1.461e-5149.33Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_FINM21.461e-5145.61Serine hydroxymethyltransferase OS=Finegoldia magn... [more]
GLYA_CLOP11.461e-5144.74Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_BUCBP1.461e-5143.53Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]
GLYA_BUCAI1.461e-5145.78Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]
GLYA_BACHK1.461e-5144.35Serine hydroxymethyltransferase OS=Bacillus thurin... [more]
GLYA_BACCZ1.461e-5144.35Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACCR1.461e-5144.35Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACCQ1.461e-5144.35Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACC71.461e-5144.35Serine hydroxymethyltransferase OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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