EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.104e-58
Identity = 125/268 (46.64%), Postives = 171/268 (63.81%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            TR Q + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID + +E+ A   +PKLI+ GASAY++ +D++  R++ +K  A ++AD+AH +GLVAAG+  +P  +   VTTTTHK+LRGPRG MI   K      G+   T  G    M+ +   +  +    GGP
Sbjct:   21 TRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCEY----VNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNAVEEMALKVKPKLIITGASAYSQGFDFKAFREIADKVGAFLMADIAHPAGLVAAGLSANPVPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPMGITVNTKNGPRVKMMSEVIDAEVMPGIQGGP 279          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.590e-58
Identity = 115/224 (51.34%), Postives = 156/224 (69.64%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            LELI SENFTS +V++A GSV TNKY+EGYPG RYYGG EY D+ E+L ++RA + F  +     VNVQ  SGS +N   Y A++ P D +M L+L HGGHL+HG+  +    +     ++ +PY + +    IDYD++EK A   +PK+I+AGASAY R+ D+ R RK+ +   A+ L DMAHISGLVAAGV P+P E+AD+VT+TTHK+LRGPR  +I  R+
Sbjct:   33 LELIASENFTSEAVLEATGSVFTNKYAEGYPGKRYYGGCEYTDVVENLARERASKLFGAEY----VNVQPHSGSQANQAAYGAVVSPGDTVMGLNLAHGGHLTHGHALNFSGKT-----YKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPRIIDFARFRKIADAVGAVFLVDMAHISGLVAAGVHPNPCEFADIVTSTTHKTLRGPRAGIILARE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.590e-58
Identity = 117/231 (50.65%), Postives = 157/231 (67.97%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PKLIV GASAY R+ D+   R + +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGADH----ANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKLIVVGASAYPRVLDFAAFRAIADKVGALVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCRE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.590e-58
Identity = 119/220 (54.09%), Postives = 150/220 (68.18%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            LELI SENF S +V++A GSV+TNKY+EGYPGARYYGG EY+D+ ES+  +RA E F         NVQ  SG+ +N   Y A L+P D IM + L HGGHL+HG      KI+    +F  +PY + E TG IDYD++   A   RPKLIV GASAY R  D+ R+R + +   A+++ DMAHI+GL+AAG+  SP  YADVVTTTTHK+LRGPRG MI
Sbjct:   29 LELIASENFVSRAVLEAQGSVLTNKYAEGYPGARYYGGCEYVDIVESVAIRRAKEIFGAGH----ANVQPHSGAQANMAAYFAFLEPGDTIMGMRLAHGGHLTHG-----AKINFSGRYFRYVPYGVEEETGRIDYDRMHAIAREHRPKLIVGGASAYPRELDFARMRAIADDVGALLMIDMAHIAGLIAAGLHMSPVPYADVVTTTTHKTLRGPRGGMI 239          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.688e-58
Identity = 112/231 (48.48%), Postives = 158/231 (68.40%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            Q KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E++  +R  + F  +   W  NVQ  SG+ +N  V+ A+L P D  + L+L HGGHLSHG       +++  + +    Y + E TG +DYDQ+E+ A   +PKLIV G SAY+R +DY+R+R++ +K  A+++ DMAH +GL+AAG++ +P EYA +VT+TTHK+LRGPRG +I   K  E
Sbjct:   18 QLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSETIAIERLKKLFNAE---WA-NVQPHSGAQANAAVFFAVLNPGDTFLGLNLSHGGHLSHG-----SPVNSSGVLYHATEYNVKEDTGRVDYDQMEEVALREKPKLIVGGGSAYSRDWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLNNPLEYAHIVTSTTHKTLRGPRGGIILLGKDFE 239          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 4.688e-58
Identity = 126/267 (47.19%), Postives = 169/267 (63.30%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            R Q + LELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  A+LKP DRIM LDL HGGHL+HG      K++     FE   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D++  R V +K  A ++AD+AH +GL+AAG++  P  +   VTTTTHK+LRGPRG MI   K      G+   T +G    M+ +   +  +    GGP
Sbjct:   22 RRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCDY----VNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTHG-----SKVNFSGQLFEAHSYGVDRETGCIDMNKVEEMALEVRPKLIICGASAYSQGFDFKAFRDVADKVGAFLMADIAHPAGLIAAGLLNDPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPLGITVKTKKGSRTKMMSEVIDAEIMPGIQGGP 279          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.688e-58
Identity = 113/228 (49.56%), Postives = 156/228 (68.42%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  + F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI++ DMAH +GL+AAG++ +P +YA +VT+TTHK+LRGPRG +I   K
Sbjct:   18 QLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKQIFGAE---WA-NVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNKETGRVDYDQMEEIALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVIMMGK 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEF5 (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.688e-58
Identity = 117/229 (51.09%), Postives = 157/229 (68.56%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N +VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++  TG IDYD++E+ A   +PK+IVAG SAY++  D+ R R++ +K  A++  DMAH++GLVAAG+ P+P  YADVVTTTTHK+LRGPRG +I   K  EEI
Sbjct:   30 IELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGADY----ANVQPHSGSSANSEVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTRTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLI-LAKANEEI 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.123e-58
Identity = 116/231 (50.22%), Postives = 156/231 (67.53%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGADH----VNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCRE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.123e-58
Identity = 116/231 (50.22%), Postives = 156/231 (67.53%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGADH----VNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCRE 240          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLP82.104e-5846.64Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_SOLUE3.590e-5851.34Serine hydroxymethyltransferase OS=Solibacter usit... [more]
GLYA_GEOMG3.590e-5850.65Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_DESAP3.590e-5854.09Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_PARD84.688e-5848.48Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_CHLPB4.688e-5847.19Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_BACV84.688e-5849.56Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA2_PSEF54.688e-5851.09Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA_GEOSM6.123e-5850.22Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_GEOBB6.123e-5850.22Serine hydroxymethyltransferase OS=Geobacter bemid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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