EY660014

Overview
NameEY660014
Unique NameEY660014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_HALHL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.586e-11
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  248 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            + + T+ ++  A    +++SR+L +  L  I + +P LN +I V  + A + AD AD        G L G   +P++ KD   T D + TT GS  L     P DA VV +L EAGA++LGKA++ E+A
Sbjct:    1 MHQKTVAEISAALHAGEISSRELTDSLLKRIEQFDPRLNSLITVTAEQARAAADAADARLRAGEAGPLTG---VPLVHKDIFCT-DGVATTCGSRMLEPFRAPYDATVVRRLAEAGAVMLGKANMDEFA 125          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: QRSL1_MACFA (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Macaca fascicularis GN=QRSL1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  260 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            T++++  A KQ ++T  +L +  L  I +    LN  I V+ + AL QA+E+  E+  K   SL  L GIP+ +KDN +T   + TT  S  L G + P +A VV KL + GA+++GK +L E+A
Sbjct:    5 TLQEVSAALKQGQITPTELCQKCLSLIKKTK-FLNAYITVSEEVALKQAEES--EKRYKNGQSLGDLDGIPVAVKDNFSTSG-IETTCASNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFA 125          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  260 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            TI       K+ KL+S +L   +L  I +L P +   + V P+ AL+QA  AD   ++K  G +  L GIP+ LKD + TK  + TT  S  L   V P +A VV KL E GA++LGK ++ E+A
Sbjct:    8 TIAQSHKLLKERKLSSAELTRAHLDRIEKLEPEIKAFMTVCPESALAQAKAAD--EAIKQ-GHIRPLTGIPMALKDVLCTKG-IRTTCSSRMLENFVPPYNAHVVDKLAEEGAVLLGKTNMDEFA 128          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: QRSL1_MOUSE (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Mus musculus GN=Qrsl1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  260 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            T++++  A KQ ++T  +L +  L  I +    LN  I V+ + AL QA+E+  E+  K   SL  L GIP+ +KDN +T   + TT  S  L G V P +A VV KL + GA+++GK +L E+A
Sbjct:    5 TLREVSAALKQGQVTPTELCKNCLSLIKKTK-YLNAYITVSEEVALKQAEES--EKRYKQGQSLGDLDGIPVAVKDNFSTTG-IETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFA 125          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 2
Query:  260 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWANFRSSMHPXGFCARVXKEEIICSISRSLGGRAVA 733
            T  +L     + ++++ ++V+     +  L P +   + +  D AL QA   D +  + A  ++  L GIP+ +KDN+ T D + TT  S  L   V P DA VVTKL EAGA+++GK +L E+A   SS    GF A     +I      S GG A +
Sbjct:    7 TAHELHDLLVRKEVSATEIVKTQADRMQALEPKIRAFVTLTVDKALEQAARVDAK--IAAGEAIGPLEGIPMAIKDNMCT-DGVRTTCSSKILNNFVPPYDATVVTKLKEAGAVMMGKTNLDEFA-MGSSTENSGFFATCNPWDIERVPGGSSGGSAAS 161          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: QRSL1_HUMAN (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Homo sapiens GN=QRSL1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.533e-11
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  260 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            +++++  A KQ ++T  +L +  L  I +    LN  I V+ + AL QA+E+  E+  K   SL  L GIPI +KDN +T   + TT  S  L G + P +A VV KL + GA+++GK +L E+A
Sbjct:    5 SLREVSAALKQGQITPTELCQKCLSLIKKTK-FLNAYITVSEEVALKQAEES--EKRYKNGQSLGDLDGIPIAVKDNFSTSG-IETTCASNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFA 125          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_GEOSL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sulfurreducens GN=gatA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 56/161 (34.78%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  254 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWANFRSSMHPXGFCARVXKEEIICSISRSLGGRAVA 733
            E T+ +L     + +++S +     L  I   +  +N  I V PD AL+ A+ AD  R + A G  P L G+P+ LKD   T+  + TT GS  L   + P D  VV KL EAGA+I+GK +  E+A   SS     F A      + C    S  G A A
Sbjct:    5 ELTLHELHDKLAKREVSSVEATRALLARIEATDSRVNAYITVTPDEALAAAEAAD--RRIAAGGLTP-LTGVPVALKDIFVTRG-IRTTCGSKILGNFIPPYDGTVVAKLREAGAVIVGKLNQDEFA-MGSSGESSAFGATKNPWNLACIPGGSSSGSAAA 160          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  254 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            + TI +L    K+ +L+S +     L  I  ++P +N  I V P+ AL+ A+ AD  R + A G +  L GIP+ LKD   TK  + TT  S  L   V P D   V KL EAGA+I+GK +  E+A
Sbjct:    5 DLTIHELHDRLKRKELSSVEATRAMLARIEAVDPKVNAYITVTPEEALAAAEAAD--RRIAA-GDMAPLTGIPVALKDIFVTKG-IRTTCASKILDNFVPPYDGTAVAKLKEAGAVIVGKLNQDEFA 127          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_GEOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  248 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWANFRSSMHPXGFCARVXKEEIICSISRSLGGRAVA 733
            I + TI +L    K  +++S +     L  I  ++  +N  I V P+ AL QA++AD  R + A G +  L GIP+ LKD   TK  + TT GS  L   V P D   V KL E GA+I+GK +  E+A   SS     F       ++ C+   S GG A A
Sbjct:    3 IFDLTIHELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTPEQALVQAEDAD--RRIAA-GEIAPLTGIPVGLKDIFVTKG-IRTTCGSRILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFA-MGSSNESSYFGPCKNPWDLSCTPGGSSGGSAAA 160          
BLAST of EY660014 vs. ExPASy Swiss-Prot
Match: GATA_NATTJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 45/129 (34.88%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  248 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPD-ALSQADEADCERSVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLXEAGAIILGKASLSEWA 631
            + E T+ +++   +Q   +S +LV      I      +   I +  + AL+Q+ E D +R+      L  L GIP+ +KDNI TKD + T+  S  L   V P +A V++KL EAGAII+GK ++ E+A
Sbjct:    3 LHELTLMEVKRGLEQGDFSSEELVTSVYDRIEETEDHIKAYITLTKEQALAQSKEIDSQRAKGE--ELGPLAGIPVAIKDNICTKD-VTTSCASKILEDFVPPYNATVISKLAEAGAIIVGKTNMDEFA 128          
The following BLAST results are available for this feature:
BLAST of EY660014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
GATA_HALHL1.586e-1135.66Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
QRSL1_MACFA2.071e-1137.60Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_DEHE12.071e-1139.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
QRSL1_MOUSE2.705e-1138.40Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_HELMI2.705e-1133.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
QRSL1_HUMAN3.533e-1137.60Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_GEOSL4.615e-1134.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_GEOMG4.615e-1138.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_GEOBB4.615e-1135.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_NATTJ6.027e-1134.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660014 ID=EY660014; Name=EY660014; organism=Citrus sinensis; type=EST; length=936bp
CCTAAACAGAGGCGTCCGGCAAAAGTGATTACAATATATAAACCCGTTTG
GGGCAGCTGCGCTGCCACCGCGCAGCTGCGCTGCCTCCGCCCAGCTGCTC
CCCAGGCCAATTCTAAAGGAATATTCCCCTAAAATTGTTTAACAAAAGAC
TACCAATAATAATATGTCATTGACCTTTCCTTTCTTTTCACATCTACTCC
TGATTCTTCTAGCCATGTCAACCGATCGATCAGACGATGAATTCCCAATA
AGAGAAGCAACTATCAAGGATCTCCAGCTCGCGTTCAAGCAAAACAAGCT
TACGTCCCGGCAGCTGGTTGAATTTTACCTCGGAGAAATCCACAGGCTCA
ACCCGCTGCTCAACGGAGTCATAGAGGTGAACCCTGATGCGCTATCCCAA
GCTGATGAAGCTGACTGCGAGCGCAGTGTTAAGGCACCAGGTTCACTGCC
CGGTTTACATGGGATTCCTATTCTTCTCAAGGATAACATTGCAACCAAGG
ACAAGATGAACACCACTGCTGGCTCGTATGCTCTGCTCGGCTCAGTCGTG
CCCCGGGATGCTGGTGTGGTGACCAAATTGANGGAAGCTGGTGCCATTAT
TCTGGGAAAGGCTAGCTTGAGTGAGTGGGCTAATTTTAGATCCTCAATGC
ACCCAANTGGTTTTTGTGCTAGGGTGGNCAAGGAAGAAATCATATGTTCT
ATCAGCAGATCCCTGGGGGGTCGAGCAGTGGCTCAGCAATATCGGTAGCA
GCCAACTGGGTTGCAGTGTCCCTGGGAACTGAACTGATGGTCCATTCTCT
CCCCTCCAGGTCCAACTTAGGAGTGGGATCCAACCAACCGTGGGCCTCCC
CAGCGAGCCGGAGCCTCCCTTTACTCCTAAAAGGAACCCGGTGGGGATGG
GGAACCTTGCCCTTCAATTGGATGGTGCACCTTTAA
back to top