EY659989

Overview
NameEY659989
Unique NameEY659989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: EXOB_RHILT (UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  117 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG 671
            G TVLV G AG++GSH  L L  +G   +  DNF++ +   ++    +          EGD+ D   L ++        +LH AA   V  ++++P S+  +N+ G + LL   ++     + V++S+ + YGL   VP  E+HR   P + Y  TK   E+    Y+    L    LR+F   G
Sbjct:    3 GETVLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFVRWGPAE----------EGDIRDRARLDEVLAKHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGIN-AFVFSSTCATYGLPQSVPLDETHR-QVPINPYGRTKYIVEQALADYDQYGSLRSVVLRYFNAAG 175          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 54/166 (32.53%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY------DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 605
            VLVTG AG++GSH  L L + G   + +DNF++          SL+R ++  L    V   E D+ D   L  LF    F  V+H A    V  ++Q P  Y   N+ G + LLE+ ++ +   ++V++SS++VYG    +P  E+H T    + Y  +K   EE+
Sbjct:    4 VLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGEDSMPESLRRVQE--LTGRSVEFEEMDILDQAALQHLFKKHSFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRA-HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEM 166          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 60/193 (31.09%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  114 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL------LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGLALTGLRFFTVYG 671
            +  TVLVTG AG++GSH  L L   G   + +DN ++  + ++ R ++        L  H++     DL D   L K+F    F  V+H A    V  ++Q P  Y  +N+ G + L EV  + +    +V++SS++VYGL  +VP +E       A+ Y  TK   EEI    Y       +  LR+F   G
Sbjct:    2 SSQTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSETAIHRVKELAGKFAGNLSFHKL-----DLRDRDALEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEV-MAAHGCKKLVFSSSATVYGLPKEVPCTEEFPL-SAANPYGRTKLIIEEICRDIYRAEQEWKIILLRYFNPVG 187          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.633e-13
Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 632
            VLV+G AG++GSH  L L   G  V+ +DN ++    SL+R + KL  +H  ++   + DL D   L K+F    F  V+H A    V  +++ P  Y  +N+ G + LLEV  + +   ++V++SS++VYG   +VP +E        + Y  TK   EEI      +YG
Sbjct:    6 VLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVK-KLAAEHGERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEV-MAQHGCKNLVFSSSATVYGSPKEVPCTEEFPI-SALNPYGRTKLFIEEIC---RDVYG 170          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 60/198 (30.30%), Postives = 88/198 (44.44%), Query Frame = 3
Query:   93 SATPRSPNGMTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ--PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 674
            S TP++     +L+TGAAGF+ SH +  L +      ++ LD  +  Y  +LK         +  F V+GD+  A L+  L        ++H AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG   +     +H   Q  P + Y+ATK   E +   Y   YGL +   R   VYGP
Sbjct:    3 SYTPKN-----ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLD--YCSNLKNLNPSKHSPNFKF-VKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP 192          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 55/185 (29.73%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  120 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGLALTGLRFFTVYG 671
            M +LVTG AG++GSH  + L      ++ LDN ++  + SL+R +Q  +    V   +GD+ D  +L K+F       V+H A    V    +N    + +N+ G + L+E     N   +IV++SS++VYG    +P  ES       + Y  +K   E I   T      L+   LR+F   G
Sbjct:    1 MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERVKQ--ITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEEMLKANVN-TIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERILEDTVKAFPQLSAVVLRYFNRVG 182          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 57/200 (28.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   93 SATPRSPNGMT-VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG--PWGR 683
            S   R   G+T VLVTG AG++GSH +L L +    V  +DN +     +++  ++   +  ++  +  DL DA  + K+F    F  V+H AA A V  +   P  Y  +  +  + +LE   + N + +++++S+ + YG    +P +E+     P + Y   KK  E+I   ++    +A+  LR+F V G  P GR
Sbjct:   40 SVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVK-TLIYSSTCATYGEPDTMPITEA-TPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGR 237          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 57/187 (30.48%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ--PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 674
            +L+TGAAGF+ SH +  L +      ++ LD  +  Y  +LK         +  F V+GD+  A L+  L        ++H AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG   +     +H   Q  P + Y+ATK   E +   Y   YGL +   R   VYGP
Sbjct:    9 ILITGAAGFIASHVANRLVRSYPDYKIVVLDKLD--YCSNLKNLNPSKSSPNFKF-VKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP 192          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 56/192 (29.17%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  120 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH-VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD 689
            M +LV G AG++GSH    L ++G+  V+ +D+  + +  ++  A +           +GDL D   ++ +F   P    V+H AA + V  +M+ P  Y  +N AG + LLEV      +  IV++S+++ YG+  ++P  E+    +P + Y  +K   E I    +  YG+    LR+F V G   +PD
Sbjct:    1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAVHPAAK---------FYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVK-YIVFSSTAATYGIPDEIPIKET-TPQRPINPYGESKLMMETIMKWSDRAYGIKFVPLRYFNVAG--AKPD 179          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 51/160 (31.87%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 605
            +LVTG  GF+GSH  ++L K G  V+ LDN  +     L R   K +   ++   +GD+ D  +L ++F       V+H A    V  ++  P  Y  +N++G + L E         SIV++SS++VYG   +VP++E        S Y A+K   E I
Sbjct:    4 ILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRL--KTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVF-SIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERI 160          
The following BLAST results are available for this feature:
BLAST of EY659989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
EXOB_RHILT1.182e-1329.19UDP-glucose 4-epimerase OS=Rhizobium leguminosarum... [more]
GALE_MOUSE1.544e-1332.53UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
GALE2_CYATE2.016e-1331.09UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE2_ARATH2.633e-1333.33UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
RHM1_ARATH3.439e-1330.30Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
GALE_PASHA3.439e-1329.73UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]
ARAE2_ORYSJ3.439e-1328.50Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
RHM3_ARATH4.492e-1330.48Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
GALE_STRMU4.492e-1329.17UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
GALE_NEIMB4.492e-1331.88UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659989 ID=EY659989; Name=EY659989; organism=Citrus sinensis; type=EST; length=878bp
TGCAGGACCGGTCCGGAATTTTTCGGACGGCGACGCGTNCGCTCCTCTTT
TCTTACAATGGCGGGGNAGAGTGGGAGAAGCAGGTCCGCCACTCTGCCAC
CCCTCGCTCACCCAACGGGATGACCGTTTTGGTCACCGGAGCTGCCGGTT
TCGTCGGATCTCACTGCTCCCTCGCTCTCAAAAAGCGAGGCGATGGCGTT
TTGGGGTTGGATAATTTCAACAGCTATTACGATCCGTCGCTTAAACGGGC
GAGGCAAAAGCTGCTTCAAAAGCATCAAGTCTTCATCGTCGAAGGGGACC
TGAATGACGCTCCCCTGTTAACAAAGCTTTTCGACGTTGTACCTTTCACC
CACGTACTGCACTTAGCAGCACAGGCCGGGGTTCGCTACGCCATGCAGAA
TCCGCAATCTTACGTGGCATCCAACATCGCTGGATTCGTCAACCTGCTCG
AAGTTTGCAAATCGGTGAACCCTCAGCCGTCGATCGTGTGGGCCTCATCG
AGCTCGGTGTACGGCCTCAACACCCAGGTCCCCTTCTCCGAGTCGCACAG
AACCGACCAGCCCGCGAGTTTGTACGCGGCGACTAAGAAAGCCGGGGAGG
AAATCGCCCACACTTACAACCATATTTACGGTCTTGCCCTCACGGGCCTA
AGGTTCTTCACCGTGTACGGCCCCTGGGGGAGACCCGACATGGCTTACTT
CTTCTTCACCAAGATATCTTACAGGGCAAACCATTGATGTGTACAAGACG
CAAGATGACAGGGAGGTGGCGCGTGACTCCCATACATANATGACGAANNG
AAGGGCTGTGCTCGGGCGTTGGACACGGGGGGAAAAACACCGGGGAGCCG
GGGGAAAAAACGGGGCCCCCGCTCGCTG
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