EY659989

Overview
NameEY659989
Unique NameEY659989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 52/182 (28.57%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG 671
            +LV G AG++GSH  L L  +G   +  DN ++ ++  +K     +L+K       GD+ D   L ++        +LH AA   V  ++++P ++  +N+ G + LL    +     + V++S+ + YGL   VP  ESH+   P + Y  TK   E+    Y    GL    LR+F   G
Sbjct:    6 ILVVGGAGYIGSHTCLQLAAKGYQPVVYDNLSNGHEEFVKWG---VLEK-------GDIRDRQRLDEVLARHKPRAILHFAAMIEVGESVKDPAAFYDNNVIGTLTLLSAALAAGID-AFVFSSTCATYGLPDSVPMDESHK-QAPINPYGRTKWICEQALKDYGLYKGLRSVILRYFNAAG 175          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 61/201 (30.35%), Postives = 98/201 (48.76%), Query Frame = 3
Query:   93 SATPRSPNGMT-VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNH-IYGLALTGLRFFTVYG--PWGR 683
            S   R   G+T VLVTG AG++GSH SL L K    V  +DN +     ++K  ++   Q  ++  +  DL D   + K+F    F  V+H AA A V  +   P  Y  +  +  + +LE   S +   +++++S+ + YG   ++P  E+ R   P + Y   KK  E+I   +      +A+  LR+F V G  P GR
Sbjct:   54 SVFSRHEPGVTHVLVTGGAGYIGSHASLRLLKDNYRVTIVDNLSRGNMGAVKVLQELFPQPGRLQFIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMAS-HGVKTLIYSSTCATYGEPEKMPIVETTR-QLPINPYGKAKKMAEDIILDFTKGRKDMAVMILRYFNVIGSDPEGR 252          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GAL10_CANMA (Bifunctional protein GAL10 (Fragment) OS=Candida maltosa GN=GAL10 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 45/130 (34.62%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  129 LVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 515
            LVTG AG++GSH  + L   G  V+  DN  NS YD   +   + ++++H    ++ D+ +   L ++F     + V+H AA   V  + + P  Y  +N++G + LL VCKS N + +IV++SS++VYG
Sbjct:    7 LVTGGAGYIGSHTVIELINHGIKVVIADNLSNSSYDAVARI--EFIVKQHVSHFIKVDIRNEKELNQVFSNHKISGVIHFAALKAVGESTKIPLEYYDNNVSGTIALLNVCKSNNVK-TIVFSSSATVYG 133          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 52/165 (31.52%), Postives = 77/165 (46.67%), Query Frame = 3
Query:  123 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK----RARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 605
            TVLVTG AG++GSH  L +   G  V+ +DN  + Y    K     +R + +   +V     D+ D   +  +F       V H AA   V  + + P  Y  +N+ G  N+L    + N     V++SS++VYG    +P +E H T    S Y  TK   EEI
Sbjct:    5 TVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEALSRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCRIPLQYYHNNMTG-TNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNCTSPYGKTKYFTEEI 168          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  120 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI---AHTYNHIYGLALTGLRFFTVYG--PWGR 683
            M +LVTG AG++GSH  + L   G  ++ LDN ++    +L R ++  +    +   E DL D   +  +F       V+H A    V  ++  P  Y  +N+ G   L E  +    +  IV++SS++VYG+    P +E        + Y  TK   E+I    HT ++ + +AL  LR+F  +G  P GR
Sbjct:    1 MAILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKE--ITGKDLTFYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVK-KIVFSSSATVYGVPETSPITEDFPLG-ATNPYGQTKLMLEQILRDLHTADNEWSVAL--LRYFNPFGAHPSGR 187          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY------DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 515
            VLVTG AG++GSH  L L + G   + +DNF++          SL+R ++  L    V   E D+ D   L  LF    F  V+H A    V  ++Q P  Y   N+ G + LLE+ +++  + S+V++SS++VYG
Sbjct:    5 VLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNSIRGEDSMPESLRRVQE--LTGRSVEFEEMDILDQAALQHLFKKHNFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAMGVK-SLVFSSSATVYG 137          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 56/190 (29.47%), Postives = 86/190 (45.26%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD 689
            VLVTG AGF+ SH  ++L +      ++ LD  +  Y  SLK   + +  K     ++GD+ D+  +  LF+V     VLH AAQ  V  +      +   N+ G   L+        +   ++ S+  VYG +    F ES    QP + YA++K A E    +Y   Y   +   R   VYGP   P+
Sbjct:   20 VLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLD--YCASLKNL-EPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVE-KFIYVSTDEVYGGSLDQEFDES-SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE 204          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD 689
            VLVTG AGF+ SH  ++L +      ++ LD  +  Y  SLK   + +  K     ++GD+ D+  +  LF+      VLH AAQ  V  +      +   N+ G   L+        +   ++ S+  VYG +    F ES    QP + YA++K A E    +Y   Y   +   R   VYGP   P+
Sbjct:   20 VLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLD--YCASLKNL-ETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVE-KFIYVSTDEVYGGSLDKEFDES-SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE 204          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD 689
            VLVTG AGF+ SH  ++L +      ++ LD  +  Y  SLK   + +  K     ++GD+ D+  +  LF+      VLH AAQ  V  +      +   N+ G   L+        +   ++ S+  VYG +    F ES    QP + YA++K A E    +Y   Y   +   R   VYGP   P+
Sbjct:   20 VLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLD--YCASLKNL-ETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVE-KFIYVSTDEVYGGSLDKEFDES-SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE 204          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 3
Query:  129 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG 671
            LVTG AG+VGS  +  L + G+ V+ L N ++ +   +                 GD+ D   + K+F   + F  VLH AA + V  ++  P+ Y  +N+ G + LLE  +    +  +V++S+++ YG   QVP  ES  T +P + Y A+K A + +       +GL    + +F V G
Sbjct:    6 LVTGGAGYVGSVVAQHLVEAGNEVVVLHNLSTGFRAGVPAGAS---------FYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAGVR-RLVFSSTAATYGEPEQVPIVESAPT-RPTNPYGASKLAVDHMITGEAAAHGLGAVSVPYFNVAG 176          
The following BLAST results are available for this feature:
BLAST of EY659989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
EXOB_RHIME6.486e-1228.57UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
ARAE3_ORYSJ6.486e-1230.35Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
GAL10_CANMA1.106e-1134.62Bifunctional protein GAL10 (Fragment) OS=Candida m... [more]
GALE_DROME1.445e-1131.52Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_BACSU1.445e-1129.53UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_RAT1.887e-1134.56UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
TGDS_MOUSE2.465e-1129.47dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
TGDS_HUMAN2.465e-1128.95dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_BOVIN2.465e-1128.95dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
GALE_STRLI2.465e-1129.12UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659989 ID=EY659989; Name=EY659989; organism=Citrus sinensis; type=EST; length=878bp
TGCAGGACCGGTCCGGAATTTTTCGGACGGCGACGCGTNCGCTCCTCTTT
TCTTACAATGGCGGGGNAGAGTGGGAGAAGCAGGTCCGCCACTCTGCCAC
CCCTCGCTCACCCAACGGGATGACCGTTTTGGTCACCGGAGCTGCCGGTT
TCGTCGGATCTCACTGCTCCCTCGCTCTCAAAAAGCGAGGCGATGGCGTT
TTGGGGTTGGATAATTTCAACAGCTATTACGATCCGTCGCTTAAACGGGC
GAGGCAAAAGCTGCTTCAAAAGCATCAAGTCTTCATCGTCGAAGGGGACC
TGAATGACGCTCCCCTGTTAACAAAGCTTTTCGACGTTGTACCTTTCACC
CACGTACTGCACTTAGCAGCACAGGCCGGGGTTCGCTACGCCATGCAGAA
TCCGCAATCTTACGTGGCATCCAACATCGCTGGATTCGTCAACCTGCTCG
AAGTTTGCAAATCGGTGAACCCTCAGCCGTCGATCGTGTGGGCCTCATCG
AGCTCGGTGTACGGCCTCAACACCCAGGTCCCCTTCTCCGAGTCGCACAG
AACCGACCAGCCCGCGAGTTTGTACGCGGCGACTAAGAAAGCCGGGGAGG
AAATCGCCCACACTTACAACCATATTTACGGTCTTGCCCTCACGGGCCTA
AGGTTCTTCACCGTGTACGGCCCCTGGGGGAGACCCGACATGGCTTACTT
CTTCTTCACCAAGATATCTTACAGGGCAAACCATTGATGTGTACAAGACG
CAAGATGACAGGGAGGTGGCGCGTGACTCCCATACATANATGACGAANNG
AAGGGCTGTGCTCGGGCGTTGGACACGGGGGGAAAAACACCGGGGAGCCG
GGGGAAAAAACGGGGCCCCCGCTCGCTG
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