EY659986

Overview
NameEY659986
Unique NameEY659986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.349e-17
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  232 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 477
            V   L  + +NK C DC +K P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+ EQ++ M   GN +A   ++ +
Sbjct:   15 VLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAY 96          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: YIQ9_SCHPO (Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe GN=SPAC824.09c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.090e-16
Identity = 50/122 (40.98%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  229 LVFRKLKAKSENKMCFDCNA-KNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQ-----HGWTD---GGKIEAKYTSRAAELYKQILAKEVAK 567
            LV + L  +  NK+C DC   + P WAS   G+F+CI CS VHRSLGVH+S V+S +LDSW+ EQ + M   GN RA ++++      H  +D      I+ KY  +   LY +I + E  K
Sbjct:   14 LVLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGGHVPSDSKIATFIKTKYEFKKWVLYPEIPSPETLK 135          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.429e-16
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  259 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 471
            EN+ C DC  K P WASV  GIF+C+ CS +HRSLGVHIS VRS  LD+W  EQ+  +   GN++A  +++
Sbjct:   27 ENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWE 97          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.206e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  241 KLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMV-YGGNNRAQVFFK 471
            KL  +  NK C DC +  P W S++ G+F+CI CS VHRSLGVHIS V S  LD W+ +Q+ M+V YGGN      F+
Sbjct:   52 KLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFE 129          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: ACAP3_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ACAP3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  232 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 471
            V +++++ + N  C DC   +P WAS+  G+ LCI+CS +HRSLGVH S VRS  LDSW  E LK+M   GN+     ++
Sbjct:  405 VLQRVQSVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCELGNSAVNQIYE 484          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: AGD15_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  232 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 471
            +   L    +N+ C DC +K P WASV  GIF+C+ CS +HRSLGVHIS VRS  LD+W  +Q+  M   GN +   +++
Sbjct:   18 ILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWLPDQVAFMKSTGNAKGNEYWE 97          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  238 RKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMV-YGGNNRAQVFFK 471
            R L  +S+N++C DC A +P WAS   G+F+C+ C  VHRSLG HIS V S  LD WS E++  M+  GGN  A   ++
Sbjct:   19 RDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYE 97          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: CEG1A_DROME (Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.021e-14
Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  262 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ--ILAKEVAKNMAEEAG 588
            N  C DC A NP WAS+  G+ +CI+CS VHR+LG HIS VRS  LD W +  L +M+  GN+ A        W    +   K TS+A+   K+  + +K  AK      G
Sbjct:  714 NGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAIGNSLANSV-----WESNTRQRVKPTSQASREDKERWVRSKYEAKEFLTPLG 819          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.741e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  238 RKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMV-YGGNNRAQVFFK 471
            R L  + +N++C DC A +P WAS   G+F+C+ C  VHRSLG HIS V S  LD WS E++  M+  GGN  A   ++
Sbjct:   19 RDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYE 97          
BLAST of EY659986 vs. ExPASy Swiss-Prot
Match: ACAP2_CHICK (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Gallus gallus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.741e-14
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  262 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 450
            N  C DC   +P WAS+  GI LCI+CS +HRSLGVH S VRS  LDSW  E LK+M   GN+
Sbjct:  411 NAACCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDSWEPELLKLMCELGND 473          
The following BLAST results are available for this feature:
BLAST of EY659986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SMAP2_BOVIN8.349e-1745.12Stromal membrane-associated protein 2 OS=Bos tauru... [more]
YIQ9_SCHPO1.090e-1640.98Uncharacterized protein C824.09c OS=Schizosaccharo... [more]
AGD5_ARATH2.429e-1652.11Probable ADP-ribosylation factor GTPase-activating... [more]
AGD11_ARATH1.206e-1550.00Probable ADP-ribosylation factor GTPase-activating... [more]
ACAP3_HUMAN1.574e-1545.00Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGD15_ARATH2.686e-1545.00Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH5.983e-1546.84ADP-ribosylation factor GTPase-activating protein ... [more]
CEG1A_DROME1.021e-1439.64Centaurin-gamma-1A OS=Drosophila melanogaster GN=c... [more]
AGD13_ARATH1.741e-1445.57Probable ADP-ribosylation factor GTPase-activating... [more]
ACAP2_CHICK1.741e-1457.14Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659986 ID=EY659986; Name=EY659986; organism=Citrus sinensis; type=EST; length=852bp
TGAGGTACCGGTCCGGAATTTTCATACAGAGGACGNGTNCGGGTTTCTTC
CAAAACAATGAGGAGTGGGGAGGTGTTGTTCCATGACACCTCGTAAGGTT
TATAATCCCATATTCTCGTTCAGGAAAAAATCAAAATCAAAATTTACAAT
CTTGGGGTTTCGTTTTTCGTAATTTTTATTTCATAAAATTCTTTCTCGAT
GGCTTCCGATAATTTGACCGATAAGAACCTTGTTTTCAGAAAACTGAAAG
CAAAATCGGAAAACAAGATGTGTTTTGATTGTAATGCTAAGAACCCGACG
TGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATTGATTGCTCTGCCGT
TCACCGCAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTTAG
ACTCATGGAGTGCTGAGCAGCTGAAAATGATGGTGTATGGAGGAAACAAC
CGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAAAT
TGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCTTG
CAAAAGAAGTTGCTAAAAATATGGCAGAAGAGGCAGGCTTGCCATCATCA
CCGGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTTAA
GAATCAGGATGCTCCCTAAGAAATTATCANGGAAGGGCAGAAACTCAAGA
CGCTCCTGGNNTCGCAAAAGTTTCTCGTACAGNTCTTACTAGTACCGTCA
AAAAACCACTTGGTGCGAAGAAATCAGGGAAGACTGGGGGGTCTAAGTGC
TCCAAAGCTGACCTCAAGCCCAGTGAAAGCTATATGAGCAGAAGCTGAGG
AA
back to top