EY659985

Overview
NameEY659985
Unique NameEY659985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.960e-21
Identity = 63/193 (32.64%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  316 TALFFLEKDLHPGMKMNLHFTQTSNGAT-FLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAI-STEVKKGTKMQTYTIAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAYMXPLKGAGGTKAKQQQSA--TRILRMGPQHLVFK 879
            T +FF E+ +  G ++   F   +  A  FL RQ A S PF++  LP +   F V   S     M+ T++ CE P I GE K+CATSLE++++ +   LG + ++ + ST  + G  +QTYT+ +          V  H + YPY  +  H T  ++AYM  ++GA G  A    +   T      P+H+ FK
Sbjct:  166 TTVFFHEEAVRVGKRLPFRFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAPLQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCHTTGPSRAYMVDMEGARGGDAVTIATVCHTDTSLWNPEHVSFK 358          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.486e-15
Identity = 53/155 (34.19%), Postives = 72/155 (46.45%), Query Frame = 1
Query:  325 FFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            FF E  L  G  M +          TFL R   K+ PFSS  + EI+  F     S  A I+ + + ECE P   GE K C  S E MIDF+TS LG+ V   +TE   G+K +       G+      ++V  H+  YPY  +Y H+    + Y
Sbjct:  409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVY 563          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.749e-14
Identity = 51/171 (29.82%), Postives = 79/171 (46.20%), Query Frame = 1
Query:  280 AANENQLHDDPNTALFFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTE--VKKGTKMQTYTIAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            AA    L   P    FF E+DL  G +M +      +    FL R  A   PF +  +  +F      PG+   +++ +T+ EC  P  +GE K CATS E ++DF+   LG +V A +TE     G  ++   +A         +SV  H+  +PY  +Y H+  T + Y
Sbjct:  462 AARRPPLRWSPEPGKFFRERDLVAGNRMPMPDIADRTPPRAFLPRDIAAKIPFDAAAVSALFG---AAPGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVY 629          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.998e-14
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  397 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            +FL R      PFS+ K+ EI   F     S    I+ + ++ECE P    E K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      +SV  H+  YPY  +Y H+    + Y
Sbjct:  432 SFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVY 561          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.364e-13
Identity = 65/186 (34.95%), Postives = 95/186 (51.08%), Query Frame = 1
Query:  322 LFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGS-VEAEIMQNTIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVKKGTKM--QTYTIAAGVKQMAA--DQSVVVHKQNYPYAGFYLHATQTTKAYMXPLK----GAG---GTKAKQQQSA 837
            L FLE  L PG  +  + T  +  A FL R  A S P S+    +I   FS  P S V A+ +Q+ +  CE    IKGE++ CATS+ES+++F+ S LG + ++A S +V     M    Y + A V+ +A     +V  H   +P+A FY HA   T+ Y   L+    G+G   GT  K +  A
Sbjct:  111 LHFLEDALKPGSIITPYITGIATRAPFLRRDIADSIPVSTKNFADILAMFS--PISLVMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVA-VRTVAGLRGDTVTCHTMRFPFAVFYCHAINPTRVYAVVLESEEDGSGSGSGTPEKMEALA 293          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.039e-13
Identity = 50/179 (27.93%), Postives = 83/179 (46.37%), Query Frame = 1
Query:  271 YVYAANENQLHDDPNTA-LFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEV-KKGTKMQTYTIAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAYMXPL 795
            Y+++     +H       L+F E +L PG  +          + FL R  +K  PFS   + +I   FS    ++ A+ +  T++ CE  G + GE+  CATS+ES++D   S LG K V+A++     +G     Y +A+      +   +  H   YPY  F+ H  + T+ Y   L
Sbjct:  273 YIHSHGHGHVHFPEGAKDLYFFEDNLAPGSVLITRILSARQSSIFLHRNNSKHIPFSMKNITDILTMFSPVSATM-ADGIAATLQACEHTGMVHGEKAKCATSIESLLDVVVSSLGTKLVRALTPGAPMEGVPSLRYIVASATPVPNSQSMLACHDMLYPYKVFFCHTPKQTRLYQVSL 450          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.970e-13
Identity = 46/130 (35.38%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  397 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            +FL R      PFS+ KL EI   F     S    I+ + + ECE P   GE K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      ++V  H+  YPY  +Y H+    + Y
Sbjct:  436 SFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVY 565          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.843e-13
Identity = 50/155 (32.26%), Postives = 71/155 (45.81%), Query Frame = 1
Query:  325 FFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            FF EK L  G  M +          +FL R  A   PFS+ K+ E+   F     S   +++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE  KG+          G+      +SV  H+  YPY  +Y H+    + Y
Sbjct:  415 FFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVY 569          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 50/155 (32.26%), Postives = 71/155 (45.81%), Query Frame = 1
Query:  325 FFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            FF EK L  G  M +          +FL R  A   PFS+ K+ E+   F     S  A+++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K         G+      +SV  H+  YP   +Y H+    + Y
Sbjct:  417 FFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVY 571          
BLAST of EY659985 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 50/155 (32.26%), Postives = 71/155 (45.81%), Query Frame = 1
Query:  325 FFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADQSVVVHKQNYPYAGFYLHATQTTKAY 783
            FF EK L  G  M +          +FL R  A   PFS+ K+ E+   F     S  A+++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K         G+      +SV  H+  YP   +Y H+    + Y
Sbjct:  414 FFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVY 568          
The following BLAST results are available for this feature:
BLAST of EY659985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RAF1A_WHEAT3.960e-2132.64Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
Y639_ARATH2.486e-1534.19Probable polygalacturonase non-catalytic subunit A... [more]
BURPE_ORYSJ2.749e-1429.82BURP domain-containing protein 14 OS=Oryza sativa ... [more]
JP630_ARATH7.998e-1434.62Probable polygalacturonase non-catalytic subunit J... [more]
BURPA_ORYSJ1.364e-1334.95BURP domain-containing protein 10 OS=Oryza sativa ... [more]
BURP9_ORYSJ3.039e-1327.93BURP domain-containing protein 9 OS=Oryza sativa s... [more]
JP650_ARATH3.970e-1335.38Probable polygalacturonase non-catalytic subunit J... [more]
GP1_SOLLC8.843e-1332.26Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP3_SOLLC1.970e-1232.26Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.970e-1232.26Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659985 ID=EY659985; Name=EY659985; organism=Citrus sinensis; type=EST; length=964bp
ACTGGACGCCTGCGGTACCGGTCCGNGAATTCCTCATCATCCGAGGCGTN
NCGAAAAGAATTTTCCTATAGTAGGGAAGGGTGGTGTCAATGTGGATGCA
GGGAAAGGAAAGCCCTTTGGGCCACCCATGTGAATGTTGGGGGTAAGGGC
GTTGGTGTAAACACTGGAAAGCCTGACAAAAGAACCAGTGTTGGTGTTGG
CAAAGGAGGAGTATCCGTAAGTACAGGACACAAGGGAAAGCCAGTTTATG
TTGGAGTAAGCCCATTCAACTATGTATATGCTGCAAATGAGAACCAACTC
CATGATGACCCGAATACAGCTCTTTTCTTCTTGGAAAAGGACTTGCATCC
TGGCATGAAGATGAACTTGCACTTCACTCAAACTTCAAATGGAGCAACTT
TCTTATCTCGCCAAGCTGCCAAATCAACTCCTTTCTCGTCTGACAAATTG
CCTGAGATCTTTAACCAGTTTTCCGTGAAACCTGGATCAGTTGAAGCTGA
AATAATGCAGAACACAATCAAAGAGTGTGAAGACCCTGGCATTAAAGGAG
AGCAGAAATATTGTGCAACTTCACTGGAGTCAATGATTGACTTCAGCACT
TCTAAGCTTGGAAAGAGTGTTCAGGCAATTTCTACGGAGGTAAAAAAAGG
AACCAAGATGCAGACATATACAATCGCAGCTGGAGTGAAGCAGATGGCAG
CTGACCAATCAGTAGTTGTGCATAAGCAGAACTATCCATATGCTGGATTC
TACCTGCATGCAACACAAACCACAAAGGCTTACATGGNTCCCTTGAAAGG
GGCTGGTGGGACCAAAGCCAAGCAGCAGCAGTCTGCCACCCGGATTCTTC
GCATGGGCCCCCAGCATTTAGTTTTTAAGGGCTCAAAGTTAACCAGAACT
GGTCCTAATGTCCCTCCTTCCCGAGGTCCCTTGGCTGGGTCCCATTAAAA
CATGGAAAAAAAAT
back to top