EY659974

Overview
NameEY659974
Unique NameEY659974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10693 contig Csv1_Contig10693:186..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659974 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.011e-58
Identity = 106/221 (47.96%), Postives = 150/221 (67.87%), Query Frame = 3
Query:  111 GFIRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFL-TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWINEMASYVKVIDRNHCWKLV*KDFMDINTSK 770
            GF++  G+ F+++    + NG+N+YW M  A D   R+ V       A  GLTV RTWAF+DGGY  LQ SPG ++E++F+ LD VIAEARK+ ++L+LSL NN  ++GGK QYV WA  +G  L +S+D FF +P ++ Y+KN +K +L R N+ TGI Y++DPTI AWEL+NEPRCT+D SG+T+Q WI+EM  ++K ID  H   +  + F   N+ K
Sbjct:   40 GFVKRNGTQFVVDDKPLYVNGWNSYWFMDHAVDEHSRNLVGEMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFQALDHVIAEARKHDVRLLLSLVNNLQAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIRNYFKNYLKVLLTRKNSVTGIEYRNDPTIFAWELINEPRCTTDVSGKTLQDWIDEMTGFIKSIDDKHLLTVGLEGFYGPNSPK 260          
BLAST of EY659974 vs. ExPASy Swiss-Prot
Match: MAN6_ORYSJ (Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 6.928e-51
Identity = 103/215 (47.91%), Postives = 142/215 (66.05%), Query Frame = 3
Query:   87 VPHVEAGDGFIRTRGSHFLL--NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLT-SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWINEMASYVKVIDRNH 722
            VP ++    F   RG+HF+    G+  + NG+N+YWL+  A  P+  +++          GL+V RTWAFSDGG   LQ SPG ++E +F+ LD+VI EAR+  I+LIL L NN D+ GGK QYV WA++ G  +T S D F+ +P +K YYK+ +K +L R N+++ I Y D+P I AWELMNEPRC S+ SG  +QAWI EMA+YVK +D NH
Sbjct:   44 VPWLQPRMPFAARRGTHFVDADTGSPLYVNGWNSYWLL-PARSPALAAEM---LRRGRRMGLSVCRTWAFSDGGPGALQISPGRFSEAVFQVLDYVIYEARRNHIRLILCLVNNLDNLGGKAQYVQWAQAAGANMTNSTDSFYSHPTIKRYYKDYVKAILTRRNSYSRIRYSDEPAIFAWELMNEPRCVSNSSGPYLQAWIAEMAAYVKSLDTNH 254          
The following BLAST results are available for this feature:
BLAST of EY659974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN5_ARATH2.011e-5847.96Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]
MAN6_ORYSJ6.928e-5147.91Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659974 ID=EY659974; Name=EY659974; organism=Citrus sinensis; type=EST; length=867bp
TCTACAACCAGGCGTCCGGGATGAGGTTCTCGNATAAAGCTTTCGCAATC
TTCTTAGCTTTTTTCATCCACCGGCAATCTTTCTTCGTCCCACATGTTGA
AGCAGGAGATGGATTTATAAGAACAAGAGGATCGCATTTTCTGTTGAATG
GTAATCTTTACTTTGCAAATGGATTTAATGCATATTGGTTGATGTATGTA
GCTTCTGACCCATCTCAGAGATCCAAAGTATCAACTGCTTTTCATGAAGC
TGCAAGCCATGGCCTCACTGTTGCCAGAACTTGGGCTTTCAGTGATGGTG
GTTACAGACCCTTACAGCGTTCCCCTGGCTCCTACAATGAGCAAATGTTT
AAGGGATTGGATTTTGTGATAGCTGAGGCTAGAAAGTATGGGATCAAGCT
CATATTGAGCTTGGCCAATAACTATGATAGTTTTGGAGGGAAGAAGCAGT
ATGTGAACTGGGCTAGAAGTCAAGGCCAATTCCTCACATCTGATGATGAT
TTCTTCAGAAACCCTGTTGTTAAGGGCTACTACAAGAACCTTATCAAGAC
TGTTCTTAACAGATATAATACCTTTACTGGAATTCACTACAAAGATGACC
CGACAATTATGGCATGGGAGCTTATGAATGAGCCGAGATGCACATCAGAT
CCCTCTGGAAGGACCATTCAGGCCTGGATAAACGAAATGGCTTCATATGT
GAAAGTCATAGACAGAAATCACTGCTGGAAGCTGGTTTAGAAGGATTTTA
TGGACATCAACACCTCAAAGAAAGAAGTCATCCTAAATCTGATATTGAAC
AGACTTCTTTGCCATACCTGATCCNGGGATTGATTTTGCACAGTTCTTCC
TACCCTGATCATGGGTT
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