EY659958

Overview
NameEY659958
Unique NameEY659958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG1_XENTR (Protein NDRG1 OS=Xenopus tropicalis GN=ndrg1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.075e-19
Identity = 64/219 (29.22%), Postives = 107/219 (48.86%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQSSNVWHFLEAINGRPDI-------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            PS D LA+ +  V+   GL  V+ +G+ AGAYILT FA+ +   V GL+L++    A  W +W   K+        G    + ++++   FSK EV  N ++ E+      + ++ +   +N+  F+++ N R D+             L+C +L+ VG+SSP     V   SK+D   + L+++  CG      QP  +    +YF+ G G Y P  S
Sbjct:  113 PSMDQLAEMLPGVIQQLGLKSVLGLGIGAGAYILTRFALNHPSMVEGLVLININPCAEGWMDWAATKIS-------GWTHALPDMVISHLFSKDEVHSNHELVET----YRQHIVQDINQNNLQLFVKSYNSRRDLEIERPFPGSNTVTLKCPALLVVGDSSPAVDAVVDCNSKLDPTKTTLLKMSDCGGFPQVVQPAKLAEAFKYFVQGMG-YMPAAS 319          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG3_MOUSE (Protein NDRG3 OS=Mus musculus GN=Ndrg3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.353e-18
Identity = 64/223 (28.70%), Postives = 112/223 (50.22%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYF-SKEVRGNAQVPESDIVQACR-RLLDERQSSNVWHFLEAINGRPDI----------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ D+LA+ +  VL H  +  ++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G    + +++L  +F  +E++ N      D++Q  R  +  +    N+  FL + NGR D+             L+ L+C +L+ VG++SP     V   S++D   + L+++  CG +    QP  +    +YFL G G Y P+ S
Sbjct:  111 PTMDELAEMLPPVLTHLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLS-------GFTTNIVDIILAHHFGQEELQANL-----DLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMG-YIPSAS 320          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG3_BOVIN (Protein NDRG3 OS=Bos taurus GN=NDRG3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.353e-18
Identity = 65/223 (29.15%), Postives = 112/223 (50.22%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYF-SKEVRGNAQVPESDIVQACR-RLLDERQSSNVWHFLEAINGRPDI----------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ D+LA+ +  VL H  L  ++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G+   V +++L  +F  +E++ N      D++Q  R  +  +    N+  FL + NGR D+              + L+C +L+ VG+SSP     V   S+++   + L+++  CG +    QP  +    +YFL G G Y P+ S
Sbjct:  111 PTMDELAEMLPPVLTHLNLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLS-------GLTTNVVDIILSHHFGQEELQANL-----DLIQTYRLHIAQDINQENLQLFLGSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDSSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMG-YIPSAS 320          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG3_PONAB (Protein NDRG3 OS=Pongo abelii GN=NDRG3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.015e-18
Identity = 64/223 (28.70%), Postives = 112/223 (50.22%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYF-SKEVRGNAQVPESDIVQACR-RLLDERQSSNVWHFLEAINGRPDI----------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ D+LA+ +  VL H  L  ++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G+   V +++L  +F  +E++ N      D++Q  R  +  +    N+  FL + NGR D+              + L+C +L+ VG++SP     V   S+++   + L+++  CG +    QP  +    +YFL G G Y P+ S
Sbjct:  111 PTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLS-------GLTTNVVDIILAHHFGQEELQAN-----PDLIQTYRMHIAQDINQDNLQLFLNSYNGRRDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMG-YIPSAS 320          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG3_HUMAN (Protein NDRG3 OS=Homo sapiens GN=NDRG3 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.015e-18
Identity = 64/223 (28.70%), Postives = 112/223 (50.22%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYF-SKEVRGNAQVPESDIVQACR-RLLDERQSSNVWHFLEAINGRPDI----------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ D+LA+ +  VL H  L  ++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G+   V +++L  +F  +E++ N      D++Q  R  +  +    N+  FL + NGR D+              + L+C +L+ VG++SP     V   S+++   + L+++  CG +    QP  +    +YFL G G Y P+ S
Sbjct:  111 PTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLS-------GLTTNVVDIILAHHFGQEELQANL-----DLIQTYRMHIAQDINQDNLQLFLNSYNGRRDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMG-YIPSAS 320          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_RAT (Protein NDRG2 OS=Rattus norvegicus GN=Ndrg2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.686e-17
Identity = 58/209 (27.75%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  +L +     ++ +GV AGAYIL+ +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS +E+ GN     S+++Q  R L+    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YF+ G G
Sbjct:  119 PSQDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRSLITHAPNLENIELYWNSYNNRRDLNFERGGEMTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFVQGMG 315          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_PONAB (Protein NDRG2 OS=Pongo abelii GN=NDRG2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.654e-16
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  VL +     ++ +GV AGAYIL  +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS +E+ GN     S+++Q  R ++    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YFL G G
Sbjct:  119 PSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 315          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_MACFA (Protein NDRG2 OS=Macaca fascicularis GN=NDRG2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.654e-16
Identity = 60/209 (28.71%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  VL +     V+ +GV AGAYIL+ +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS +E+ GN     S+++Q  R ++    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YFL G G
Sbjct:  105 PSLDQLADMIPCVLQYLNFSTVIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSSLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 301          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_HUMAN (Protein NDRG2 OS=Homo sapiens GN=NDRG2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.654e-16
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  VL +     ++ +GV AGAYIL  +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS +E+ GN     S+++Q  R ++    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YFL G G
Sbjct:  119 PSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 315          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_BOVIN (Protein NDRG2 OS=Bos taurus GN=NDRG2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.654e-16
Identity = 57/209 (27.27%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  +L +     ++ +GV AGAY+L+ +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS +E+ GN     S+++Q  R ++    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YFL G G
Sbjct:  105 PSLDQLADMIPCILQYLNFSTIIGIGVGAGAYVLSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSISEMILGHLFSQEELSGN-----SELIQKYRNIIAHAPNLDNIELYWNSYNNRRDLNFVRGGDTTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 301          
The following BLAST results are available for this feature:
BLAST of EY659958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NDRG1_XENTR6.075e-1929.22Protein NDRG1 OS=Xenopus tropicalis GN=ndrg1 PE=2 ... [more]
NDRG3_MOUSE1.353e-1828.70Protein NDRG3 OS=Mus musculus GN=Ndrg3 PE=1 SV=1[more]
NDRG3_BOVIN1.353e-1829.15Protein NDRG3 OS=Bos taurus GN=NDRG3 PE=2 SV=1[more]
NDRG3_PONAB3.015e-1828.70Protein NDRG3 OS=Pongo abelii GN=NDRG3 PE=2 SV=1[more]
NDRG3_HUMAN3.015e-1828.70Protein NDRG3 OS=Homo sapiens GN=NDRG3 PE=1 SV=2[more]
NDRG2_RAT5.686e-1727.75Protein NDRG2 OS=Rattus norvegicus GN=Ndrg2 PE=1 S... [more]
NDRG2_PONAB1.654e-1628.23Protein NDRG2 OS=Pongo abelii GN=NDRG2 PE=2 SV=2[more]
NDRG2_MACFA1.654e-1628.71Protein NDRG2 OS=Macaca fascicularis GN=NDRG2 PE=2... [more]
NDRG2_HUMAN1.654e-1628.23Protein NDRG2 OS=Homo sapiens GN=NDRG2 PE=1 SV=2[more]
NDRG2_BOVIN1.654e-1627.27Protein NDRG2 OS=Bos taurus GN=NDRG2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659958 ID=EY659958; Name=EY659958; organism=Citrus sinensis; type=EST; length=941bp
TTTCGTAAAAGCGCGTCCGGATGAACCTGTACCGTCTAATGATGATTTAG
CGGATCAAATCGCTGAGGTTCTTAACCATTTTGGACTTGGCCCAGTGATG
TGTATGGGGGTTACAGCTGGAGCTTACATTCTTACACTATTTGCTATGAA
ATATAGGCACCGTGTACTTGGGTTAATCCTAGTTTCTCCTCTGTGCAAAG
CACCCTCTTGGACAGAATGGTTGTATAATAAGGTAATGTCAAATTTACTC
TACTACTATGGCATGTGTGGGGTGGTGAAGGAATTATTGCTAAAGCGGTA
CTTCAGCAAGGAAGTTCGTGGTAATGCCCAAGTACCAGAATCTGATATAG
TTCAGGCATGCAGAAGACTGCTGGATGAAAGACAGAGCTCAAATGTTTGG
CATTTTCTTGAAGCAATTAATGGGAGACCCGACATCAGCGAAGGGCTGCG
GAAACTGCAATGCCGCTCTCTAATATTTGTTGGTGAAAGCTCTCCTTTCC
ATTCTGAGGCTGTCCACATGACTTCTAAAATTGATAGAAGATATAGTGCT
TTGGTTGAGGTTCAGGCATGTGGATCGATGGTGACAGAGGAGCAGCCCCA
TGCCATGTTGATACCAATGGAGTACTTTCTCATGGGATATGGAATGTACA
GACCAACTCTAAGTGGTAGCCCAAGAGTCCATTGAGTCCGGGTTGCATCT
CCCCAGAGCTTCTTCCACCCGAAGCATGGGGCTGAAGTAAAACCAATAAA
AACTCAAATTTCCTGCGGGATCTTCTAATTTAAGAAGGAAGAAGAAGGCG
GGGGTCTTTTTTGCAAATATTTGGTTAAGGGGCATGGAAATTTTCTGATT
GGGCCGAACCACAAAAAGGAATTTACAAACCTTGTAATTAGGGAAAAGCC
GGAAGATTCTTGGTTTTATTTAACAAAAACCGGTAAATTCT
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