EY659958

Overview
NameEY659958
Unique NameEY659958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_PANTR (Protein NDRG2 OS=Pan troglodytes GN=NDRG2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.161e-16
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  VL +     ++ +GV AGAYIL  +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS +E+ GN     S+++Q  R ++    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YFL G G
Sbjct:  105 PSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKRWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 301          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_MOUSE (Protein NDRG2 OS=Mus musculus GN=Ndrg2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.161e-16
Identity = 57/209 (27.27%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS D LAD I  +L +     ++ +GV AGAYIL+ +A+ +   V GL+L++    A  W +W  +K+        G+   + +++L   FS +E+ GN     S+++Q  R ++    +  N+  +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YFL G G
Sbjct:  119 PSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPDMILGHLFSQEELSGN-----SELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 315          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG3_XENTR (Protein NDRG3 OS=Xenopus tropicalis GN=ndrg3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 58/214 (27.10%), Postives = 105/214 (49.07%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACR-RLLDERQSSNVWHFLEAINGRPDI---------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            P+ D+LA+ +  VL H  L  ++ +GV AGAY+L+ FA+     V GL+L++    A  W +W  +K+       +    +V+ +L + +  +E++ N      D+VQ  R  +  +    N+  F+ + N R D+         S     ++C  L+ VG+SSP     V   S++D   + L+++  CG +    QP  +   ++YF+ G G
Sbjct:  111 PTMDELAEMLCAVLTHLNLRSIIGIGVGAGAYVLSRFALNNPLLVEGLVLINIDPCAKGWIDWAASKLS------FWTSNIVEIVLGQLFGDEELQSNL-----DLVQTYRLHIAQDINQDNLQLFVTSYNSRKDLEIERPIFGSSTPTNTIKCPVLLVVGDSSPAVDAVVECNSRLDPTRTTLLKMADCGGLPQAVQPGKLTEAIKYFVQGMG 313          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDR4A_XENLA (Protein NDRG4-A OS=Xenopus laevis GN=ndrg4-A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.400e-15
Identity = 58/219 (26.48%), Postives = 102/219 (46.58%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRRLLDE-RQSSNVWHFLEAINGRPDI-------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ D LA  +  V+ HFG   ++ +GV AGAY+L  FA+ +   V G++L++       W +W  +K+        G+   + E +L   FS+E   N     +++VQ  R+ +      SN+  F    N R D+       +   + L+   ++ VG+++P     V   SK+D   +  +++   G +    QP  +    +YFL G G Y P+ S
Sbjct:  138 PTMDQLAAMLPSVMQHFGFQSIIAIGVGAGAYVLAKFALIFPELVEGMVLINIDPNGKGWIDWAASKIS-------GLASSLPETVLSHLFSQEELMN----NTELVQNYRQQISNCVNQSNLQLFWNMYNSRRDLEMSRPGTAPNAKTLRAPVMLVVGDNAPAEECVVECNSKLDPTNTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG-YMPSAS 344          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG4_HUMAN (Protein NDRG4 OS=Homo sapiens GN=NDRG4 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 57/212 (26.89%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRRLL-DERQSSNVWHFLEAINGRPDIS-------EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS + LA  +  V+ HFG   V+ +GV AGAY+L  FA+ +   V GL+LV+       W +W   K+        G+   + + +L   FS+E      V  +++VQ+ R+ + +    +N+  F    N R D+           + L+C  ++ VG+++P     V   SK+D   +  +++   G +    QP  +    +YFL G G
Sbjct:   87 PSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWAATKLS-------GLTSTLPDTVLSHLFSQE----ELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 287          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG4_RAT (Protein NDRG4 OS=Rattus norvegicus GN=Ndrg4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 56/212 (26.42%), Postives = 98/212 (46.23%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRRLLDE-RQSSNVWHFLEAINGRPDIS-------EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS + LA  +  V+ HFG   V+ +GV AGAY+L  FA+ +   V GL+L++       W +W   K+        G+   + + +L   FS+E      V  +++VQ+ R+ +      +N+  F    N R D+           + L+C  ++ VG+++P     V   SK+D   +  +++   G +    QP  +    +YFL G G
Sbjct:   87 PSMEQLATMLPNVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLS-------GLTSTLPDTVLSHLFSQE----ELVNNTELVQSYRQQISSVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 287          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG4_MOUSE (Protein NDRG4 OS=Mus musculus GN=Ndrg4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.078e-15
Identity = 56/212 (26.42%), Postives = 98/212 (46.23%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRRLLDE-RQSSNVWHFLEAINGRPDIS-------EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            PS + LA  +  V+ HFG   V+ +GV AGAY+L  FA+ +   V GL+L++       W +W   K+        G+   + + +L   FS+E      V  +++VQ+ R+ +      +N+  F    N R D+           + L+C  ++ VG+++P     V   SK+D   +  +++   G +    QP  +    +YFL G G
Sbjct:   87 PSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLS-------GLTSTLPDTVLSHLFSQE----ELVNNTELVQSYRQQISNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEEGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 287          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG3_XENLA (Protein NDRG3 OS=Xenopus laevis GN=ndrg3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 59/222 (26.58%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACR-RLLDERQSSNVWHFLEAINGRPDI----------SEGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ D+LA+ +  VL H  L  ++ +GV AGAY+L+ FA+     V GL+L++    A  W +W  +K+       +    VV+ +L   +  +E++ +      D+VQ  R  +  +    N+  F+ + N R D+          +     ++C  L+ VG++SP     V   S++D   + L+++  CG +    QP  +   ++YF+ G G Y P+ S
Sbjct:  111 PTMDELAEMLTAVLTHLNLRSIIGIGVGAGAYVLSRFALNNPLLVEGLVLLNIDPCAKGWIDWAASKLS------FWTTNVVEVVLGHLFGYEELQSSL-----DLVQTFRLHIAQDINQDNLELFVNSYNSRKDLEIERPVFGSSTPTNTTIKCPVLLVVGDNSPAVDAVVECNSRLDPTRTTLLKMADCGGLPQVVQPGKLAEAIKYFVQGMG-YMPSAS 320          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDR4B_XENLA (Protein NDRG4-B OS=Xenopus laevis GN=ndrg4-B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.641e-14
Identity = 56/219 (25.57%), Postives = 100/219 (45.66%), Query Frame = 2
Query:   32 PSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRRLLDE-RQSSNVWHFLEAINGRPDIS-------EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGMYRPTLS 664
            P+ + LA  +  V+ HFG   ++ +GV AGAY+   FA+ +   V G++L++       W +W  +K+        G+   + E +L   FS+E   N     +++VQ  R+ +      SN+  F    N R D+           + L+   ++ VG+++P     V   SK+D   +  +++   G +    QP  +    +YFL G G Y P+ S
Sbjct:  115 PTMEQLAAMLPSVMQHFGFQSIIGIGVGAGAYVFAKFALIFPELVEGMVLINIDPNGKGWIDWAASKLS-------GLTSSLPETVLSHLFSQEELMN----NTELVQNYRQQISSCVNQSNLQLFWNMYNSRRDLEMSRPGTVPNAKTLRAPVMLVVGDNAPAEDSVVECNSKLDPTNTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG-YMPSAS 321          
BLAST of EY659958 vs. ExPASy Swiss-Prot
Match: NDRG2_XENTR (Protein NDRG2 OS=Xenopus tropicalis GN=ndrg2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.450e-14
Identity = 56/213 (26.29%), Postives = 99/213 (46.48%), Query Frame = 2
Query:   17 PDEPVPSNDDLADQIAEVLNHFGLGPVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-KEVRGNAQVPESDIVQACRRLLDERQSSNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 643
            P    PS D LA+ I  VL +     ++ +GV AGAYI   + + + + V GL+L++    A  W +W   K+        G+   + +++L   FS +E+ GN+ V    + Q    +L+    SN   +  + N R D++    G   L+C  ++ VG+ +P     V   SK+D   ++ +++   G      QP  +    +YF+ G G
Sbjct:  110 PGYQYPSLDQLAETIPCVLQYLNFPSIIGIGVGAGAYIFAKYTLSHANTVEGLVLINIDPNAKGWMDWAAQKLT-------GLTQSISDMMLGHLFSAEELSGNSDV----VRQYKASILNSPLISNYQLYWNSYNSRRDLNLERGGGVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQITQPGKLTEAFKYFVQGMG 311          
The following BLAST results are available for this feature:
BLAST of EY659958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NDRG2_PANTR2.161e-1628.23Protein NDRG2 OS=Pan troglodytes GN=NDRG2 PE=2 SV=... [more]
NDRG2_MOUSE2.161e-1627.27Protein NDRG2 OS=Mus musculus GN=Ndrg2 PE=1 SV=1[more]
NDRG3_XENTR2.822e-1627.10Protein NDRG3 OS=Xenopus tropicalis GN=ndrg3 PE=2 ... [more]
NDR4A_XENLA1.400e-1526.48Protein NDRG4-A OS=Xenopus laevis GN=ndrg4-A PE=2 ... [more]
NDRG4_HUMAN5.322e-1526.89Protein NDRG4 OS=Homo sapiens GN=NDRG4 PE=2 SV=2[more]
NDRG4_RAT6.951e-1526.42Protein NDRG4 OS=Rattus norvegicus GN=Ndrg4 PE=2 S... [more]
NDRG4_MOUSE9.078e-1526.42Protein NDRG4 OS=Mus musculus GN=Ndrg4 PE=1 SV=1[more]
NDRG3_XENLA1.548e-1426.58Protein NDRG3 OS=Xenopus laevis GN=ndrg3 PE=2 SV=1[more]
NDR4B_XENLA2.641e-1425.57Protein NDRG4-B OS=Xenopus laevis GN=ndrg4-B PE=2 ... [more]
NDRG2_XENTR3.450e-1426.29Protein NDRG2 OS=Xenopus tropicalis GN=ndrg2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659958 ID=EY659958; Name=EY659958; organism=Citrus sinensis; type=EST; length=941bp
TTTCGTAAAAGCGCGTCCGGATGAACCTGTACCGTCTAATGATGATTTAG
CGGATCAAATCGCTGAGGTTCTTAACCATTTTGGACTTGGCCCAGTGATG
TGTATGGGGGTTACAGCTGGAGCTTACATTCTTACACTATTTGCTATGAA
ATATAGGCACCGTGTACTTGGGTTAATCCTAGTTTCTCCTCTGTGCAAAG
CACCCTCTTGGACAGAATGGTTGTATAATAAGGTAATGTCAAATTTACTC
TACTACTATGGCATGTGTGGGGTGGTGAAGGAATTATTGCTAAAGCGGTA
CTTCAGCAAGGAAGTTCGTGGTAATGCCCAAGTACCAGAATCTGATATAG
TTCAGGCATGCAGAAGACTGCTGGATGAAAGACAGAGCTCAAATGTTTGG
CATTTTCTTGAAGCAATTAATGGGAGACCCGACATCAGCGAAGGGCTGCG
GAAACTGCAATGCCGCTCTCTAATATTTGTTGGTGAAAGCTCTCCTTTCC
ATTCTGAGGCTGTCCACATGACTTCTAAAATTGATAGAAGATATAGTGCT
TTGGTTGAGGTTCAGGCATGTGGATCGATGGTGACAGAGGAGCAGCCCCA
TGCCATGTTGATACCAATGGAGTACTTTCTCATGGGATATGGAATGTACA
GACCAACTCTAAGTGGTAGCCCAAGAGTCCATTGAGTCCGGGTTGCATCT
CCCCAGAGCTTCTTCCACCCGAAGCATGGGGCTGAAGTAAAACCAATAAA
AACTCAAATTTCCTGCGGGATCTTCTAATTTAAGAAGGAAGAAGAAGGCG
GGGGTCTTTTTTGCAAATATTTGGTTAAGGGGCATGGAAATTTTCTGATT
GGGCCGAACCACAAAAAGGAATTTACAAACCTTGTAATTAGGGAAAAGCC
GGAAGATTCTTGGTTTTATTTAACAAAAACCGGTAAATTCT
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