EY659954
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 7.394e-17 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 649 GLADDPEAFAELQVKEIKNGKLAMFSMFGFFVQAIVTGK 765 GLADDP+ F EL+VKEIKNG+LAM M GF+ QAIVTG+ Sbjct: 55 GLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGE 93 HSP 2 Score: 47.3654 bits (111), Expect = 7.394e-17 Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 3 Query: 504 SLIHAQSILAIWACQVVLMGAVEGYR---IAGGPLGEVTDPLY 623 +LIHA+S+LAI A QV+LMGAVEGYR A G GE D LY Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLY 46
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.144e-17 Identity = 52/111 (46.85%), Postives = 60/111 (54.05%), Query Frame = 3 Query: 483 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LY + ++ +GPLENL DHL DP +N Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16 Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY + ++ +GPLENL DHL DP +N Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16 Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY + ++ +GPLENL DHL DP +N Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16 Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY + ++ +GPLENL DHL DP +N Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16 Identity = 49/103 (47.57%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY + ++ +GPLENL DH+ DP +N Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16 Identity = 49/103 (47.57%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY + ++ +GPLENL DH+ DP +N Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.927e-16 Identity = 67/217 (30.88%), Postives = 99/217 (45.62%), Query Frame = 3 Query: 210 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GN-----------QEWKVGYVLHVWXLRSGHCH---RQGPLENLXDHLXDPCH 809 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++ G G+ +E K G + + + + H GP++NL HL DP H Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 260
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.017e-15 Identity = 69/229 (30.13%), Postives = 101/229 (44.10%), Query Frame = 3 Query: 174 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GN-----------QEWKVGYVLHVWXLRSGHCH---RQGPLENLXDHLXDPCH 809 S+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++ G G+ +E K G + + + + H GP++NL HL DP H Sbjct: 51 SRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 260
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14 Identity = 83/261 (31.80%), Postives = 104/261 (39.85%), Query Frame = 3 Query: 96 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP------SLIHAQSILAIWAC--QVVLMGAVEGYRIAGG---PLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQ------GPLENLXDHLXDPCHNMPG 821 VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP I A LAI Q + E + GG PLG DP +E K G + + + G C +Q GPLENL HL DP HN G Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKL-------------------KEIKNGRLAMLAFV--GFCVQQSAYPGTGPLENLATHLADPWHNNIG 234 The following BLAST results are available for this feature:
BLAST of EY659954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659954 ID=EY659954; Name=EY659954; organism=Citrus sinensis; type=EST; length=903bpback to top |