EY659954

Overview
NameEY659954
Unique NameEY659954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:27..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.394e-17
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query:  649 GLADDPEAFAELQVKEIKNGKLAMFSMFGFFVQAIVTGK 765
            GLADDP+ F EL+VKEIKNG+LAM  M GF+ QAIVTG+
Sbjct:   55 GLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGE 93          

HSP 2 Score: 47.3654 bits (111), Expect = 7.394e-17
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 3
Query:  504 SLIHAQSILAIWACQVVLMGAVEGYR---IAGGPLGEVTDPLY 623
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LY
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLY 46          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.144e-17
Identity = 52/111 (46.85%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  483 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LY                         +  ++                +GPLENL DHL DP +N
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY                         +  ++                +GPLENL DHL DP +N
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY                         +  ++                +GPLENL DHL DP +N
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY                         +  ++                +GPLENL DHL DP +N
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 49/103 (47.57%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY                         +  ++                +GPLENL DH+ DP +N
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 49/103 (47.57%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  504 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQGPLENLXDHLXDPCHN 812
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY                         +  ++                +GPLENL DH+ DP +N
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.927e-16
Identity = 67/217 (30.88%), Postives = 99/217 (45.62%), Query Frame = 3
Query:  210 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GN-----------QEWKVGYVLHVWXLRSGHCH---RQGPLENLXDHLXDPCH 809
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++                     G G+           +E K G +  +  + +   H     GP++NL  HL DP H
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 260          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.017e-15
Identity = 69/229 (30.13%), Postives = 101/229 (44.10%), Query Frame = 3
Query:  174 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GN-----------QEWKVGYVLHVWXLRSGHCH---RQGPLENLXDHLXDPCH 809
            S+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++                     G G+           +E K G +  +  + +   H     GP++NL  HL DP H
Sbjct:   51 SRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 260          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14
Identity = 83/261 (31.80%), Postives = 104/261 (39.85%), Query Frame = 3
Query:   96 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP------SLIHAQSILAIWAC--QVVLMGAVEGYRIAGG---PLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQ------GPLENLXDHLXDPCHNMPG 821
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP        I A   LAI     Q  +    E  +  GG   PLG   DP                           +E K G +  +  +  G C +Q      GPLENL  HL DP HN  G
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKL-------------------KEIKNGRLAMLAFV--GFCVQQSAYPGTGPLENLATHLADPWHNNIG 234          
The following BLAST results are available for this feature:
BLAST of EY659954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB21_EUGGR7.394e-1771.79Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_RAPSA9.144e-1746.85Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2D_SOLLC1.194e-1648.54Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.194e-1648.54Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.194e-1648.54Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC2.037e-1647.57Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.037e-1647.57Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB12_SOLLC5.927e-1630.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.017e-1530.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU1.118e-1431.80Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659954 ID=EY659954; Name=EY659954; organism=Citrus sinensis; type=EST; length=903bp
TTCAACAACCACGCGTCCGCTCTTGCTTTCCAACTTCTGCTTCTCAATTA
AATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCCTCATTCGTCGG
CAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCC
GCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCG
TGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCC
CCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAG
CCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAA
GTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCC
GGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCA
AGGCGGGAGCCCAGATCTTCAGCGAGGGCGGGCTAGACTACTTGGGAAAC
CCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGT
GGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCG
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGG
TTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTNCAGGTTAAGGAAATCA
AGAATGGAAAGTTGGCTATGTTCTCCATGTTTGGNTTCTTCGTTCAGGCC
ATTGTCACCGGCAAGGACCGTTAGAGAACTTGGNCGACCACTTGGNCGAC
CCCTGTCACAACATGCCTGGGCCTACGCCACCACTTTGTCCCGGAAAGTG
AGCTTCNGTGATACATTAGTAGCGTGGAATTGAAATGAGATGAATTTGGT
ATG
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