EY659954

Overview
NameEY659954
Unique NameEY659954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:27..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 70/214 (32.71%), Postives = 89/214 (41.59%), Query Frame = 3
Query:  243 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR----------IAGG---PLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQ------GPLENLXDHLXDPCHNMPG 821
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R            GG   PLG   DP                           +E K G +  +  +  G C +Q      GPLENL  HL DP HN  G
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKV-------------------KEIKNGRLALLAIV--GFCVQQSAYLGTGPLENLATHLADPWHNNIG 235          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  240 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 467
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  249 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 452
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.917e-12
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  649 GLADDPEAFAELQVKEIKNGKLAMFSMFGFFVQAIVTGK 765
            GLA DPE  A+LQ+ EIK+ +LAM +  GF VQA  TGK
Sbjct:  227 GLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265          

HSP 2 Score: 46.595 bits (109), Expect = 1.917e-12
Identity = 58/209 (27.75%), Postives = 78/209 (37.32%), Query Frame = 3
Query:  162 RKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDP 617
            +K+A K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P      ++  IW  +V+++G +E  R A          GG    PLG   DP
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADP 232          
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 2.612e-11
Identity = 58/206 (28.16%), Postives = 76/206 (36.89%), Query Frame = 3
Query:  174 SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDPL 620
            +K+V S  P + P           + P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P      ++  IW  +V+++G +E  R A          GG    PLG  +DP+
Sbjct:   45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPV 230          

HSP 2 Score: 44.2838 bits (103), Expect = 2.612e-11
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  649 GLADDPEAFAELQVKEIKNGKLAMFSMFGFFVQAIVTGK 765
            GLA DP   A+LQ+ EIK+ +LAM    GF VQA  TGK
Sbjct:  224 GLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGK 262          
The following BLAST results are available for this feature:
BLAST of EY659954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB11_SOLLC4.696e-1332.71Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
LH18_EUGGR1.046e-1246.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4A_ARATH1.917e-1258.97Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.612e-1128.16Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659954 ID=EY659954; Name=EY659954; organism=Citrus sinensis; type=EST; length=903bp
TTCAACAACCACGCGTCCGCTCTTGCTTTCCAACTTCTGCTTCTCAATTA
AATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCCTCATTCGTCGG
CAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCC
GCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCG
TGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCC
CCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAG
CCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAA
GTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCC
GGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCA
AGGCGGGAGCCCAGATCTTCAGCGAGGGCGGGCTAGACTACTTGGGAAAC
CCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGT
GGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCG
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGG
TTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTNCAGGTTAAGGAAATCA
AGAATGGAAAGTTGGCTATGTTCTCCATGTTTGGNTTCTTCGTTCAGGCC
ATTGTCACCGGCAAGGACCGTTAGAGAACTTGGNCGACCACTTGGNCGAC
CCCTGTCACAACATGCCTGGGCCTACGCCACCACTTTGTCCCGGAAAGTG
AGCTTCNGTGATACATTAGTAGCGTGGAATTGAAATGAGATGAATTTGGT
ATG
back to top