EY659954
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13 Identity = 70/214 (32.71%), Postives = 89/214 (41.59%), Query Frame = 3 Query: 243 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR----------IAGG---PLGEVTDPLYXXXXXXXXXXXXXXXXXC*AXG*GNQEWKVGYVLHVWXLRSGHCHRQ------GPLENLXDHLXDPCHNMPG 821 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + VE R GG PLG DP +E K G + + + G C +Q GPLENL HL DP HN G Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKV-------------------KEIKNGRLALLAIV--GFCVQQSAYLGTGPLENLATHLADPWHNNIG 235
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3 Query: 240 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 467 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3 Query: 249 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 452 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 1.917e-12 Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 Query: 649 GLADDPEAFAELQVKEIKNGKLAMFSMFGFFVQAIVTGK 765 GLA DPE A+LQ+ EIK+ +LAM + GF VQA TGK Sbjct: 227 GLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265 HSP 2 Score: 46.595 bits (109), Expect = 1.917e-12 Identity = 58/209 (27.75%), Postives = 78/209 (37.32%), Query Frame = 3 Query: 162 RKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDP 617 +K+A K+V++ P + P + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L GV W AG ++ G YLG P ++ IW +V+++G +E R A GG PLG DP Sbjct: 44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADP 232
BLAST of EY659954 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 45.4394 bits (106), Expect = 2.612e-11 Identity = 58/206 (28.16%), Postives = 76/206 (36.89%), Query Frame = 3 Query: 174 SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDPL 620 +K+V S P + P + P YL G GDYG+D GL E AKN RE E+IH RWAML LG + E L GV W AG ++ G YLG P ++ IW +V+++G +E R A GG PLG +DP+ Sbjct: 45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPV 230 HSP 2 Score: 44.2838 bits (103), Expect = 2.612e-11 Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1 Query: 649 GLADDPEAFAELQVKEIKNGKLAMFSMFGFFVQAIVTGK 765 GLA DP A+LQ+ EIK+ +LAM GF VQA TGK Sbjct: 224 GLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGK 262 The following BLAST results are available for this feature:
BLAST of EY659954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659954 ID=EY659954; Name=EY659954; organism=Citrus sinensis; type=EST; length=903bpback to top |