EY659950

Overview
NameEY659950
Unique NameEY659950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:493..1346. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 426.017 bits (1094), Expect = 1.278e-118
Identity = 209/234 (89.32%), Postives = 216/234 (92.31%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWISGIXV 739
            IAPAFMDKL+VH+  N M+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGAL  RVYDD VR W+  I V
Sbjct:  121 IAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGV 353          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 423.32 bits (1087), Expect = 8.283e-118
Identity = 206/234 (88.03%), Postives = 215/234 (91.88%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWISGIXV 739
            IAPAFMDKLVVHIT N ++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGAL  RVYDD VR ++  + V
Sbjct:  133 IAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGV 366          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.845e-117
Identity = 205/234 (87.61%), Postives = 216/234 (92.31%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWISGIXV 739
            IAPAF+DKLVVHI  N M+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGAL  RVYDD VR WISG+ V
Sbjct:  137 IAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGV 370          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 418.313 bits (1074), Expect = 2.665e-116
Identity = 202/230 (87.83%), Postives = 214/230 (93.04%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWIS 727
            IA  FMDKLVVH++ N M+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGAL  RVYDD VR W+S
Sbjct:  129 IAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVS 358          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 410.609 bits (1054), Expect = 5.556e-114
Identity = 197/234 (84.19%), Postives = 212/234 (90.60%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWISGIXV 739
            IAPAFMDKLVVHIT N ++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGAL  RVY D VR W++ + V
Sbjct:  131 IAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGV 364          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 2.340e-104
Identity = 182/234 (77.78%), Postives = 200/234 (85.47%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWISGIXV 739
            I+PAF+DK+ +HI  N M LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGAL  RVYDD VR WI+   V
Sbjct:  106 ISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGV 339          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.419e-85
Identity = 158/265 (59.62%), Postives = 195/265 (73.58%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWISGIXVXXXXXXXXXXXXXPHSSTKDD--MXELLES 823
            IAP F+DKL VHIT N ++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF AL  R+YD+ +R++I  +               P +  K D  +  L+ES
Sbjct:    5 IAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIES 269          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.059e-84
Identity = 153/230 (66.52%), Postives = 184/230 (80.00%), Query Frame = 2
Query:   38 IAPAFMDKLVVHITNNPMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALXXRVYDDXVRNWI 724
            IAP F+DKL VHIT N +++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF AL  R+YD  +R++I
Sbjct:    5 IAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFI 234          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.497e-30
Identity = 91/194 (46.91%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  104 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGAL 685
            ++VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAG                                         RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGAL
Sbjct:   45 LRVPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAG-----------------------------------------RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGAL 139          
BLAST of EY659950 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTT 364
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY659950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCAB_HORVU1.278e-11889.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH8.283e-11888.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.845e-11787.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.665e-11687.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL5.556e-11484.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.340e-10477.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC5.419e-8559.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP2.059e-8466.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY8.497e-3046.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.746e-1263.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659950 ID=EY659950; Name=EY659950; organism=Citrus sinensis; type=EST; length=847bp
TCAAAAAAGGGACGCGTNCGACGATCGTTGCTNAAAAATTGCCCCTGCTT
TCATGGACAAGCTTGTTGTTCACATCACCAATAACCCCATGTCCCTGCCC
AACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGG
AAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCAA
TTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACCCGCT
AAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAGGAAGGG
AAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAGCTGGTCGTA
TGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGGTTAACGCCACA
CTCATGAACATTGCTGATAACCCAACTTGTGTCCAACTCCCTGGTATGTA
CAACAAGGAGGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAATGACT
TCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTC
TACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTT
CAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTTGACACCT
TCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGANGGNCAGAGTCTAT
GATGATGANGTGAGGAATTGGATCTCTGGTATTGNTGTNGAAGCATTGNC
AAGAGCCTTGTGACTCAAAGAAGCAGCCCCACATTCGAGCACCAAGGATG
ACATGGNAGAGCTGCTCGAGTCGGAAACATGATTGTGCAAGAGCAGA
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