EY659941

Overview
NameEY659941
Unique NameEY659941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:32..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 6.741e-96
Identity = 185/249 (74.30%), Postives = 201/249 (80.72%), Query Frame = 2
Query:   62 STMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            +TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    4 ATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 240          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.502e-95
Identity = 178/246 (72.36%), Postives = 198/246 (80.49%), Query Frame = 2
Query:   92 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAEL+++  E K G       +   V  + +G    +GP+EN  D
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPIENLAD 253          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.309e-94
Identity = 175/241 (72.61%), Postives = 197/241 (81.74%), Query Frame = 2
Query:  104 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            ++ P  N+L   G      R++MRK TG KSV++   SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFAEL+++  E K G       +   V  + +G    +GP+EN  D
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPIENLAD 257          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.406e-93
Identity = 185/247 (74.90%), Postives = 199/247 (80.57%), Query Frame = 2
Query:   62 STMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYG DRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEA AEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    4 STMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVK--ELKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 235          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.730e-93
Identity = 153/208 (73.56%), Postives = 170/208 (81.73%), Query Frame = 2
Query:   80 SSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 685
            S+F GK       GNE      N G  R +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++FAEL+++
Sbjct:    9 SAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVK 212          

HSP 2 Score: 60.077 bits (144), Expect = 1.730e-93
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGKDR*RTLAT-LGRPCQTHAWAYATTFVP 833
            +KNGRLAMFSMFGFF QAIVTGK   + L   +  P   +AWA+AT FVP
Sbjct:  214 LKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVP 263          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.131e-93
Identity = 173/241 (71.78%), Postives = 197/241 (81.74%), Query Frame = 2
Query:  104 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            ++ P  N+L   G      R++MRK TG KSV++   SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFA+++++  E K G       +   V  + +G    +GP+EN  D
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPIENLAD 257          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.244e-91
Identity = 175/252 (69.44%), Postives = 197/252 (78.17%), Query Frame = 2
Query:   59 TSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            TST AL+S+F G+ +      NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAEL+++  E K G       +   V  + +G    +GP+EN  D
Sbjct:    3 TSTAALTSTFSGQQLKPV---NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVK--ELKNGRLAMFSMFGFFVQAIVTG----KGPIENLSD 244          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 9.428e-90
Identity = 170/252 (67.46%), Postives = 196/252 (77.78%), Query Frame = 2
Query:   62 STMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            +T   S++  G++  L    NELS         R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    4 ATAMHSTALAGQS--LVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLND 247          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 4.679e-89
Identity = 165/213 (77.46%), Postives = 178/213 (83.57%), Query Frame = 2
Query:  161 TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            T  K  SS SPW+G D VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVK--ELKNGRLAMFSMFGFFVPAIVTG----KGPLENLAD 207          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.173e-88
Identity = 169/249 (67.87%), Postives = 190/249 (76.31%), Query Frame = 2
Query:   62 STMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAEL+++  E K G       +   V  + +G    +GP+EN  D
Sbjct:    4 ATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPIENLAD 243          
The following BLAST results are available for this feature:
BLAST of EY659941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_ORYSJ6.741e-9674.30Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY1.502e-9572.36Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY6.309e-9472.61Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_SOYBN1.406e-9374.90Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB215_PEA1.730e-9373.56Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2A_PYRPY3.131e-9371.78Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_POLMU2.244e-9169.44Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_PHYPA9.428e-9067.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA4.679e-8977.46Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE5.173e-8867.87Chlorophyll a-b binding protein 48, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659941 ID=EY659941; Name=EY659941; organism=Citrus sinensis; type=EST; length=843bp
TTCCCACAAAATTCTCTTGCTTACCCAGCTTCTGCTTCTCATTAAATTCC
TCAATGGCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCC
GTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCTAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGG
GGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCGGAGGCTTTTGCTGAGCTCAGGTTAAGGAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGGTTCTTCGNTCAGGCCATTGTCACCG
GCAAGGACCGTTAGAGAACTTTGGCGACACTTGGNCGACCCTGTCAAACA
CATGCCTGGGCCTACGCCACCACTTTTGTCCCNGAANGTGAGC
back to top