EY659941

Overview
NameEY659941
Unique NameEY659941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.657e-84
Identity = 166/252 (65.87%), Postives = 189/252 (75.00%), Query Frame = 2
Query:   59 TSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            T++   SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYG DR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AEL+++  E K G       +   V  + +G    +GP+EN  D
Sbjct:    3 TASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPIENLYD 245          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.029e-81
Identity = 130/181 (71.82%), Postives = 152/181 (83.98%), Query Frame = 2
Query:  155 RKTGSKSV---SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 685
            +KT +K+    SSG  +YG +R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAEL+++
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVK 200          

HSP 2 Score: 54.299 bits (129), Expect = 1.029e-81
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGKDR*RTLAT-LGRPCQTHAWAYATTFVP 833
            IKNGRLA FSMFGFF QAIVTGK   + L   L  P   +A+A+AT F P
Sbjct:  202 IKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.756e-73
Identity = 154/250 (61.60%), Postives = 174/250 (69.60%), Query Frame = 2
Query:   89 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRN-QEWKVGYVLHVWVLRSGHCHRQGPLENFGD-TWXTLSNTCLGLRHHFCP 832
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAEL+++  +  ++               R+  LEN  D    T++N  L    +F P
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDR--RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVP 266          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.746e-71
Identity = 137/208 (65.87%), Postives = 159/208 (76.44%), Query Frame = 2
Query:  179 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            S+G  WYG DR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAEL+++  E K G       +   V  + +G    +GP++N  D
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVK--EIKNGRLAMFSCFGFFVQAIVTG----KGPIQNLAD 235          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.958e-69
Identity = 116/168 (69.05%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  194 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELRLR 685
            +YG DR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAEL+++
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVK 200          

HSP 2 Score: 49.2914 bits (116), Expect = 2.958e-69
Identity = 29/50 (58.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGKDR*RTLAT-LGRPCQTHAWAYATTFVP 833
            IKNGRLAMFS  GFF QAIVTGK   + L   L  P    A+A AT F P
Sbjct:  202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTP 251          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.575e-67
Identity = 143/250 (57.20%), Postives = 173/250 (69.20%), Query Frame = 2
Query:   59 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            ++T+  ++ F+G+  N  P  + ++ G         ++   S   WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:   10 STTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLLD 244          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.498e-66
Identity = 145/251 (57.77%), Postives = 171/251 (68.13%), Query Frame = 2
Query:   59 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            T   A S + V K   L+  G   S      +    +  ++ G+  WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    4 TIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLFD 247          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.468e-58
Identity = 121/210 (57.62%), Postives = 147/210 (70.00%), Query Frame = 2
Query:  158 KTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRN-QEWKVGYVLHVWVLRSGHCHRQGPLENFGD 778
            K  SKS SS + +YG D          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAEL+++  +  ++     +          +GP+EN  D
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTD 253          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 92/135 (68.15%), Postives = 105/135 (77.78%), Query Frame = 2
Query:  395 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AEL+++  E K G       +   V  + +G    +GP+EN  D
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPIENLYD 129          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.807e-32
Identity = 90/210 (42.86%), Postives = 115/210 (54.76%), Query Frame = 2
Query:  167 SKSVSSGSP----WYGLDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRN-QEWKVGYVLHVWVLRSGHCHRQGPLEN 769
            SK+VS  S     WYG DR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A L+++  +  ++     +      +   +GP+EN
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVEN 253          
The following BLAST results are available for this feature:
BLAST of EY659941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_PINTH2.657e-8465.87Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_CHLRE1.029e-8171.82Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.756e-7361.60Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO5.746e-7165.87Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE2.958e-6969.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC6.575e-6757.20Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.498e-6657.77Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA1.468e-5857.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.334e-4368.15Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.807e-3242.86Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659941 ID=EY659941; Name=EY659941; organism=Citrus sinensis; type=EST; length=843bp
TTCCCACAAAATTCTCTTGCTTACCCAGCTTCTGCTTCTCATTAAATTCC
TCAATGGCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCC
GTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCTAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGG
GGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCGGAGGCTTTTGCTGAGCTCAGGTTAAGGAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGGTTCTTCGNTCAGGCCATTGTCACCG
GCAAGGACCGTTAGAGAACTTTGGCGACACTTGGNCGACCCTGTCAAACA
CATGCCTGGGCCTACGCCACCACTTTTGTCCCNGAANGTGAGC
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