EY659941

Overview
NameEY659941
Unique NameEY659941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:32..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 246          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 246          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 95          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 244          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 244          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.311e-26
Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  476 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVG-------YVLHVWVLRSGHCHRQGPLENFGD 778
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAEL+++  E K G       +   V  + +G    +GPLEN  D
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVK--EIKNGRLAMFSMFGFFVQAIVTG----KGPLENLAD 103          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 84/248 (33.87%), Postives = 113/248 (45.56%), Query Frame = 2
Query:   77 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVGYVLHVWVLRSGHCHRQ------GPLEN----FGDTW 784
            S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F EL+L+  E K G +  +  +  G C +Q      GPLEN      D W
Sbjct:    9 SCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLK--EIKNGRLAMLAFV--GFCVQQSAYPGTGPLENLATHLADPW 229          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.798e-21
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 2
Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 685
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F EL+++
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVK 69          

HSP 2 Score: 37.3502 bits (85), Expect = 9.798e-21
Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGK 755
            IKNGRLAM  M GF+ QAIVTG+
Sbjct:   71 IKNGRLAMSGMLGFYAQAIVTGE 93          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.105e-19
Identity = 64/185 (34.59%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  242 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELRLRNQEWKVGYVLHVWVLRSGHCH---RQGPLEN 769
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG      A  +  LR +E K G +  + V+ +   H     GP++N
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIK-ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 250          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 71/195 (36.41%), Postives = 96/195 (49.23%), Query Frame = 2
Query:  236 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVGYVLHVWVLRSGHCHRQ------GPLEN----FGDTW 784
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F EL+++  E K G +  + ++  G C +Q      GPLEN      D W
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVK--EIKNGRLALLAIV--GFCVQQSAYLGTGPLENLATHLADPW 230          
The following BLAST results are available for this feature:
BLAST of EY659941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2F_SOLLC2.700e-2867.33Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.700e-2867.33Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.700e-2867.33Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.700e-2867.33Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.700e-2867.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA4.311e-2661.47Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU7.123e-2133.87Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_EUGGR9.798e-2165.15Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB12_SOLLC5.105e-1934.59Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC6.667e-1936.41Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659941 ID=EY659941; Name=EY659941; organism=Citrus sinensis; type=EST; length=843bp
TTCCCACAAAATTCTCTTGCTTACCCAGCTTCTGCTTCTCATTAAATTCC
TCAATGGCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCC
GTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCTAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGG
GGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCGGAGGCTTTTGCTGAGCTCAGGTTAAGGAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGGTTCTTCGNTCAGGCCATTGTCACCG
GCAAGGACCGTTAGAGAACTTTGGCGACACTTGGNCGACCCTGTCAAACA
CATGCCTGGGCCTACGCCACCACTTTTGTCCCNGAANGTGAGC
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