EY659941

Overview
NameEY659941
Unique NameEY659941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.316e-18
Identity = 60/149 (40.27%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  242 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELR 679
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +    AE++
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEIK 501          

HSP 2 Score: 32.3426 bits (72), Expect = 2.316e-18
Identity = 16/23 (69.57%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGK 755
            IKNGRLAM  MFG   Q+ VTGK
Sbjct:  500 IKNGRLAMNGMFGLEVQSHVTGK 522          

HSP 3 Score: 79.337 bits (194), Expect = 9.659e-16
Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  233 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELR 679
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D    AE++
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTDYTRAAEVK 316          

HSP 4 Score: 25.0238 bits (53), Expect = 9.659e-16
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGK 755
            +KNGRLA+ ++ G   Q + TG+
Sbjct:  315 VKNGRLALTAVAGLTAQYLATGE 337          

HSP 5 Score: 70.0922 bits (170), Expect = 1.815e-13
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  245 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELR 679
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D    AE++
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128          

HSP 6 Score: 26.5646 bits (57), Expect = 1.815e-13
Identity = 20/52 (38.46%), Postives = 24/52 (46.15%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGKDR*RTLAT-LGRPCQ-------THAWAYA 818
            IKNGRLA+ ++ GF  Q  V G      LA  L +P Q        H W  A
Sbjct:  127 IKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSIMHQWPVA 178          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 80/253 (31.62%), Postives = 114/253 (45.06%), Query Frame = 2
Query:   53 NGTSTMALSSSFVGKAVNLAPSGNELSNGGRISMRK----TGSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELRLRNQEWKVGYVLHVWVLRSGHCH---RQGPLEN 769
            NG+   A  +SF+G              G R+ + K     GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG      A  +  LR +E K G +  + V+ +   H     GP++N
Sbjct:   23 NGSIVGATKASFLG--------------GKRLRVSKFIAPVGSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIK-ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 250          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.444e-16
Identity = 73/236 (30.93%), Postives = 105/236 (44.49%), Query Frame = 2
Query:   62 STMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSV---SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELRLR 685
            +T AL SS    +++ +        G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  EL+L+
Sbjct:    2 ATQALISS---SSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224          

HSP 2 Score: 35.8094 bits (81), Expect = 3.444e-16
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTG 752
            IKNGRLAM ++ G+F QA+VTG
Sbjct:  226 IKNGRLAMLAILGYFIQALVTG 247          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.830e-16
Identity = 79/243 (32.51%), Postives = 110/243 (45.27%), Query Frame = 2
Query:   62 STMALSSS----FVGKAVNLA------PSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPLGLADDPEAFAELRLR 685
            +T AL SS    F  +AV  +      PS    S  G +  R   +  V  G    G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG  F+PLG   D ++  EL+L+
Sbjct:    2 ATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLV--RAAATPPVKQG----GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLK 226          

HSP 2 Score: 33.8834 bits (76), Expect = 9.830e-16
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTG 752
            +KNGRLAM ++ G+F Q +VTG
Sbjct:  228 VKNGRLAMLAILGYFIQGLVTG 249          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.515e-14
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 2
Query:  245 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 664
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA 200          

HSP 2 Score: 29.6462 bits (65), Expect = 6.515e-14
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGK 755
            I NGRLAM +  GF  Q  VTGK
Sbjct:  205 IANGRLAMLAFLGFIIQHNVTGK 227          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.262e-12
Identity = 62/193 (32.12%), Postives = 77/193 (39.90%), Query Frame = 2
Query:  242 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELRL 682
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    L+L
Sbjct:   65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKL 240          

HSP 2 Score: 25.0238 bits (53), Expect = 4.262e-12
Identity = 15/31 (48.39%), Postives = 17/31 (54.84%), Query Frame = 3
Query:  687 IKNGRLAMFSMFGFFXQAIVTGKDR*RTLAT 779
            IK+ RLAM +   F  QA  TGK     LAT
Sbjct:  243 IKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of EY659941 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11
Identity = 59/188 (31.38%), Postives = 85/188 (45.21%), Query Frame = 2
Query:  245 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRNQEWKVGYVLHVWVLRSGHCHRQGPLEN----FGDTW 784
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA  E  L N   ++  +  +  +   +   +GP EN      D W
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA-KEKELAN--GRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPW 242          
The following BLAST results are available for this feature:
BLAST of EY659941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LH18_EUGGR2.316e-1840.27Light-harvesting complex I LH38 proteins (Fragment... [more]
CB12_PETHY5.644e-1831.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC3.444e-1630.93Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA9.830e-1632.51Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_PEA6.515e-1434.72Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4C_ARATH4.262e-1232.12Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB24_ARATH3.000e-1131.38Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659941 ID=EY659941; Name=EY659941; organism=Citrus sinensis; type=EST; length=843bp
TTCCCACAAAATTCTCTTGCTTACCCAGCTTCTGCTTCTCATTAAATTCC
TCAATGGCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCC
GTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCTAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGG
GGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCGGAGGCTTTTGCTGAGCTCAGGTTAAGGAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGGTTCTTCGNTCAGGCCATTGTCACCG
GCAAGGACCGTTAGAGAACTTTGGCGACACTTGGNCGACCCTGTCAAACA
CATGCCTGGGCCTACGCCACCACTTTTGTCCCNGAANGTGAGC
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