EY659938

Overview
NameEY659938
Unique NameEY659938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESM (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.124e-20
Identity = 83/266 (31.20%), Postives = 126/266 (47.37%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGD-----NMIEKSTNLDWYRVQPCWMLXDIS*AEEPSDSPFV-------CTSGRVQIVALEPSSGRVETGV 875
            H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GV  +I   NK D        A   E+V+ EV   L +  +  + +P +    +   EG+      +IE +  LD Y  +P          E   D PF+         SGR  +V     +GRVE G+
Sbjct:   12 HVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVPFIIVFMNKCDMV----DDAELLELVEMEVRELLSEYDFPGDDLPVIQGSALKALEGEPEWEAKIIELAEALDSYIPEP----------ERDIDKPFLMPIEDVFSISGRGTVV-----TGRVERGI 236          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEON (Elongation factor Tu 1 OS=Shewanella oneidensis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.124e-20
Identity = 82/266 (30.83%), Postives = 126/266 (47.37%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGD-----NMIEKSTNLDWYRVQPCWMLXDIS*AEEPSDSPFV-------CTSGRVQIVALEPSSGRVETGV 875
            H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GV  +I   NK D        A   E+V+ EV   L +  +  + +P +    +   EG+      ++E +  LD Y  +P          E   D PF+         SGR  +V     +GRVE G+
Sbjct:   12 HVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVPFIIVFMNKCDMV----DDAELLELVEMEVRELLSEYDFPGDDLPVIQGSALKALEGEPEWEAKILELAAALDSYIPEP----------ERDIDKPFLMPIEDVFSISGRGTVV-----TGRVERGI 236          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_STRU0 (Elongation factor Tu OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 70/200 (35.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIE 716
            H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_RECAM (Elongation factor Tu, mitochondrial OS=Reclinomonas americana GN=TUFA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 79/259 (30.50%), Postives = 117/259 (45.17%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIEKS-----TNLDWYRVQPCWMLXDIS*AEEPSDSPFVCTSGRVQIVALEPS--SGRVETG 872
            H NI  IGHVD GK+T T  +   L      V   +++               +DK   E++RGITI  +  ++ETTK +   ID PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D           D +  EV   L    Y  +++P +    +   +G+   +KS       +D Y  QP          E   D PF+     V  +A   +  +GRVE G
Sbjct:   12 HCNIGTIGHVDHGKTTLTAAITKVLSETGGAVFTDYDQ---------------IDKAPEEKKRGITISTSHVEYETTKRHYAHIDCPGHEDYVKNMITGAAQMDGAILVVSAVDGPMP-------QTREHILLSRQVGVPSLVVFLNKVDMVN---DPEMLDLVEMEVRELLLSYKYPGDEIPIIRGSALKALQGEIEYKKSILKLMEAVDNYIPQP----------ERSFDRPFLMPVEDVFSIAGRGTVVTGRVEQG 235          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 82/258 (31.78%), Postives = 113/258 (43.80%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIEKSTNLDWYRVQPCWMLXDIS*AEEPSDSPFV-------CTSGRVQIVALEPSSGRVETGV 875
            H+NI  IGHVD GK++ T  +    G                     FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  ++VP +  S         K    D  R     +   I   E P D PF+         SGR  +V     +GRVE G+
Sbjct:   12 HVNIGTIGHVDHGKTSLTAAITKFFG--------------------EFKAYDQIDAAPEERARGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYDFPGDEVPIIKGSALAALEDSSKELGEDAVRSLMAAVDDYIPTPERPIDQPFLMPIEDVFSISGRGTVV-----TGRVERGI 233          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_NOCFA (Elongation factor Tu OS=Nocardia farcinica GN=tuf PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIEKS 722
            H+NI  IGHVD GK+T T         I K + +++     ++N+ SF +  + DK   E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +SG    EGD    KS
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLADKYP----DLNQ-SFAFDQI-DKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEEILELVEMEVRELLAAQEFD-EEAPVVRVSGLKALEGDPKWVKS 189          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_LACPL (Elongation factor Tu OS=Lactobacillus plantarum GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 72/203 (35.47%), Postives = 100/203 (49.26%), Query Frame = 3
Query:  126 HINIVVIGHVDSGKSTTTGHLIYKLG--GIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIEK 719
            H+NI  IGHVD GK+T T  +   L   G+ K      E++ A            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  +  + +P +    +   EGD   EK
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAITKVLASKGLAK------EQDFAS-----------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPEQEK 187          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_COXBU (Elongation factor Tu OS=Coxiella burnetii GN=tufA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 82/271 (30.26%), Postives = 122/271 (45.02%), Query Frame = 3
Query:  114 KETTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-------NMIEKSTNLDWYRVQPCWMLXDIS*AEEPSDSPFV-------CTSGRVQIVALEPSSGRVETGV 875
            +E  H+N+  IGHVD GK+T T  L   L           EK   E  K++F     +D    ER RGITI  +  ++++ K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH +LA  +GV  ++   NK D       K   + +  EV   L    +  ++ P +    +   EGD       ++I+    +D Y  QP          E   D PF+         SGR  +V     +GRVE G+
Sbjct:    8 REKPHVNVGTIGHVDHGKTTLTAALTKVLS----------EKYGGE--KKAFDQ---IDNAPEERARGITIATSHVEYQSDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHIVLAKQVGVPNIVVYLNKADMVD---DKELLELVEMEVRDLLNSYDFPGDETPIIVGSALKALEGDKSEVGEPSIIKLVETMDTYFPQP----------ERAIDKPFLMPIEDVFSISGRGTVV-----TGRVERGI 238          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_COXBR (Elongation factor Tu OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 82/271 (30.26%), Postives = 122/271 (45.02%), Query Frame = 3
Query:  114 KETTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-------NMIEKSTNLDWYRVQPCWMLXDIS*AEEPSDSPFV-------CTSGRVQIVALEPSSGRVETGV 875
            +E  H+N+  IGHVD GK+T T  L   L           EK   E  K++F     +D    ER RGITI  +  ++++ K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH +LA  +GV  ++   NK D       K   + +  EV   L    +  ++ P +    +   EGD       ++I+    +D Y  QP          E   D PF+         SGR  +V     +GRVE G+
Sbjct:    8 REKPHVNVGTIGHVDHGKTTLTAALTKVLS----------EKYGGE--KKAFDQ---IDNAPEERARGITIATSHVEYQSDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHIVLAKQVGVPNIVVYLNKADMVD---DKELLELVEMEVRDLLNSYDFPGDETPIIVGSALKALEGDKSEVGEPSIIKLVETMDTYFPQP----------ERAIDKPFLMPIEDVFSISGRGTVV-----TGRVERGI 238          
BLAST of EY659938 vs. ExPASy Swiss-Prot
Match: EFTU_COXBN (Elongation factor Tu OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.468e-20
Identity = 82/271 (30.26%), Postives = 122/271 (45.02%), Query Frame = 3
Query:  114 KETTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-------NMIEKSTNLDWYRVQPCWMLXDIS*AEEPSDSPFV-------CTSGRVQIVALEPSSGRVETGV 875
            +E  H+N+  IGHVD GK+T T  L   L           EK   E  K++F     +D    ER RGITI  +  ++++ K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH +LA  +GV  ++   NK D       K   + +  EV   L    +  ++ P +    +   EGD       ++I+    +D Y  QP          E   D PF+         SGR  +V     +GRVE G+
Sbjct:    8 REKPHVNVGTIGHVDHGKTTLTAALTKVLS----------EKYGGE--KKAFDQ---IDNAPEERARGITIATSHVEYQSDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHIVLAKQVGVPNIVVYLNKADMVD---DKELLELVEMEVRDLLNSYDFPGDETPIIVGSALKALEGDKSEVGEPSIIKLVETMDTYFPQP----------ERAIDKPFLMPIEDVFSISGRGTVV-----TGRVERGI 238          
The following BLAST results are available for this feature:
BLAST of EY659938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_SHESM1.124e-2031.20Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_SHEON1.124e-2030.83Elongation factor Tu 1 OS=Shewanella oneidensis GN... [more]
EFTU_STRU01.468e-2035.00Elongation factor Tu OS=Streptococcus uberis (stra... [more]
EFTU_RECAM1.468e-2030.50Elongation factor Tu, mitochondrial OS=Reclinomona... [more]
EFTU_OCHA41.468e-2031.78Elongation factor Tu OS=Ochrobactrum anthropi (str... [more]
EFTU_NOCFA1.468e-2036.14Elongation factor Tu OS=Nocardia farcinica GN=tuf ... [more]
EFTU_LACPL1.468e-2035.47Elongation factor Tu OS=Lactobacillus plantarum GN... [more]
EFTU_COXBU1.468e-2030.26Elongation factor Tu OS=Coxiella burnetii GN=tufA ... [more]
EFTU_COXBR1.468e-2030.26Elongation factor Tu OS=Coxiella burnetii (strain ... [more]
EFTU_COXBN1.468e-2030.26Elongation factor Tu OS=Coxiella burnetii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659938 ID=EY659938; Name=EY659938; organism=Citrus sinensis; type=EST; length=952bp
ACTGGACGCCTGCAGACCGGTCCGGATTCCTTCAACAACCACGCGTCCGT
GCTTGCTCTTCCGATAAGATTAACTGTCTCTTCGAAGTTTCAGTTAATTT
AACAGCCATGGGTAAGGAGACGACTCACATCAACATTGTGGTGATTGGCC
ATGTCGACTCTGGAAAGTCAACCACCACCGGACACTTGATCTACAAGCTT
GGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGA
GATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTCGACAAGCTCAAGG
CTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAG
ACCACCAAGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTT
TATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTA
TCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGT
CAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGAT
GATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGG
CTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTT
GGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGG
TGACAACATGATTGAGAAGTCTACCAACCTTGACTGGTACAGGGTCCAAC
CCTGCTGGATGCTCNNTGACATATCATGAGCCGAAGAGCCCTCAGACAGC
CCCTTCGTCTGCACTTCAGGACGTGTACAGATTGTTGCATTGGAACCGTC
CAGTGGGCGCGTTGAGACCGGGGTCTCAAGCCTTGAATGGGGTGACATTT
GGCCCCTCTGGATGACAATGAAGGTAAGCTGGTGGATGCCCACGAACTCT
GA
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