EY659914

Overview
NameEY659914
Unique NameEY659914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659914_ssr338 microsatellite EY659914_ssr338:338..349. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659914 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  170 WTPEEDQKLIDYIQKHGYGNWRTLPK--NAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 466
            W+ EED  L  Y+++ G   W  + +  N  L R  KSC  RW NYL+P IK+G    EE+  +I+L    GNKW  IAA +PGRT   +  +W     K+
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107          
BLAST of EY659914 vs. ExPASy Swiss-Prot
Match: MYB1_PHYPA (Myb-related protein Pp1 (Fragment) OS=Physcomitrella patens GN=PP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.854e-13
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 2
Query:  374 LGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTH 499
            LGN+WSAIA  +P RTDNEIKNYWNTH++KRL++MGIDPVTH
Sbjct:    1 LGNRWSAIA--IPRRTDNEIKNYWNTHLKKRLMQMGIDPVTH 40          
BLAST of EY659914 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.412e-12
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  146 KSGLKKGP--WTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 466
            ++G+++ P  WT EEDQKL   +  +G   W+ +    G Q+ G  C   W   L PDI++G +  +EEE +++L +  G+ W  IA R+  RTD + +  +   ++ R
Sbjct:   60 QNGIRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCRYQYLKSLQSR 168          
BLAST of EY659914 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  155 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYW 445
            +KKG W+PEEDQ LI+ +  +G GNW  L KN    R    CR R+ N L P + + R+  +E++ +  + + +G  KWS +A  +  RTDN+    W
Sbjct:  650 IKKGRWSPEEDQCLINAVNAYGKGNW-ILIKNHVKGRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRW 746          
The following BLAST results are available for this feature:
BLAST of EY659914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
AS1_ARATH6.773e-1539.60Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MYB1_PHYPA4.854e-1378.57Myb-related protein Pp1 (Fragment) OS=Physcomitrel... [more]
MYBM_DICDI1.412e-1232.11Myb-like protein M OS=Dictyostelium discoideum GN=... [more]
MYBL_DICDI2.039e-1137.76Myb-like protein L OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659914 ID=EY659914; Name=EY659914; organism=Citrus sinensis; type=EST; length=926bp
AAGTGGTAGCCTGCAGTACGGNNAGGAATTTTTCATATGGGGGNGTNNGT
AAAAATATTCCTAAACAGGAGGTTAATTAAATTAGAAGATTTCTAGAGGA
ACTCTTACTAGTTTTAACCCGATGGGAAGAGCACCGTGCTGTGATAAAAG
CGGGCTTAAGAAAGGGCCATGGACACCAGAGGAAGATCAGAAGTTGATAG
ATTACATTCAAAAACACGGCTACGGGAATTGGAGAACACTTCCAAAGAAT
GCCGGTTTGCAAAGATGTGGAAAGAGCTGCCGTCTCCGCTGGACTAACTA
TTTGCGACCGGATATCAAGAGAGGCAGATTTGCTTTTGAAGAAGAAGAAA
CAATAATTCAGCTACATAGTATATTGGGGAACAAGTGGTCTGCAATTGCT
GCTCGCTTGCCTGGAAGAACAGACAATGAAATCAAGAACTACTGGAACAC
TCACATTAGAAAAAGGCTTCTTCGTATGGGAATCGATCCAGTTACTCATA
GCCCTCGTCTTGATCTCCTTGATCTATCTTCGATTCTAAGCTCATCTTTT
TACAGTTCATCTCAAATGAACATTTCGAGGCTTGTCGGGGCGCAGACTTT
AGTTAACCCAGAGCTACTAAGATTGGCCACATCTCTTATGTCAACGCATC
ATCACCGCGAAAACCAAAACCAAATCCAAAAATTTATTTATCAAAATTTT
CAAGAAACCAATATCAGCAATTAGTCCAACCTGATAGTCACCAACTTCAG
ATTCCACTTGAAGCTTGCTGCACATTGACTCCTCCTCCCTCCTCTTGTGG
TTCTCATTCTAATGATCAAGCACAACTAATGAACTCTAATGTAGAGGCAT
TCCCAACAATTTCACCAACTTTAGCAACAAAATTGTCAACAAAGTGATGG
GAGAGCATGGGATTGCCTCGAACTGA
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