EY659904

Overview
NameEY659904
Unique NameEY659904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.166e-34
Identity = 70/120 (58.33%), Postives = 80/120 (66.67%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF--TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA PTINSQGNR+ AP   + KEVTK  D   SQW+ WNWRSEGDL+LNGAYF  T                  + SS+VGSIT+ AG + C+K  +C
Sbjct:  285 RHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.374e-33
Identity = 68/118 (57.63%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA+PTI SQGNR+ AP   F KEVTK  +   S+WK WNWRSEGDL+LNGAYF                   + S++V S+T  AGAL CRK  +C
Sbjct:  284 RHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.163e-32
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFT--PXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSANPTINSQGNR+ AP ++ +KEVTK  D    +W+ WNWRSEGDLLLNGA+FT                    + SS VG IT  +GAL+C++   C
Sbjct:  313 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKRGSHC 432          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.419e-32
Identity = 65/110 (59.09%), Postives = 73/110 (66.36%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGAL 373
            R GY HVVNND+T W MYAIGGS NPTINSQGNRY AP N FAKEVTKRV+T    WKGWNWRSEGD+L+NGA+F                   KS+S +  IT  +G L
Sbjct:  305 RRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVL 414          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 59/109 (54.13%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTA-ASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAG 367
            R GY HVVNND+T W MYAIGGS NPTINSQGNRY+AP +  AKEVTKRVD+    +W  WNWR+EGDL+ NGA+F                   K++S+V  +T  AG
Sbjct:  302 RRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAG 410          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.006e-25
Identity = 59/124 (47.58%), Postives = 69/124 (55.65%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF------TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            R+G  HVVNNDYT W MYAIGG+ NPTI SQGNR+ AP N  AK++TKR  T   +WK WNW+SEGD  LNGAYF                         K  +MV  +T  AG L C+    C
Sbjct:  336 RYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCKLGEAC 459          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.833e-25
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDT-AASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFH+VNN Y  W MYAIGGSANPTI SQGN + A  N F KEVTKR       +WK WNW+SEGD ++NGA+FTP                 + +S++ +     G L+C   + C
Sbjct:  274 RHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSCEIDQAC 392          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.429e-24
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            R+G+ HVVNNDYT W MYA+GGS +PTI SQGNRY AP    AKEVTKR     ++W  W W+S+GDL ++GA+F                   K  + V  +T  +GAL C+++ +C
Sbjct:  317 RYGFVHVVNNDYTHWIMYAVGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFENKYSKKDLIKAKPGTFVQRLTRFSGALNCKENMEC 434          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.861e-22
Identity = 56/120 (46.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSM--VGSITSGAGALTCRKSRQC 397
            R GY HVVNNDYT W MYAIGGS +PTI  QGNR+ AP + F K+VTKR     S W  W WRSEG+L +NGAYFT                   ++    V  +T  AG L C+  + C
Sbjct:  330 RWGYIHVVNNDYTHWNMYAIGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFTESGDPEWSSKHKDLYDGISAAPAEDVTWMTRFAGVLGCKPGKPC 449          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.174e-22
Identity = 56/124 (45.16%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXK------SSSMVGSITSGAGALTCRKSRQC 397
            R G  HVVNNDYT W MYAIGG+ NPTI SQGNR+ AP    +K+VTKR  T   +WK WNW+SE D  LNGAYF                   K        + V  +T  AG L C+  + C
Sbjct:  332 RFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPIEDSKQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQPGTKVRRLTKDAGTLGCKPGKSC 455          
The following BLAST results are available for this feature:
BLAST of EY659904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL18_SOLLC6.166e-3458.33Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL_ZINEL1.374e-3357.63Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL22_ARATH1.163e-3256.67Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH4.419e-3259.09Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH2.509e-2754.13Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL3_ARATH4.006e-2547.58Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL21_ARATH6.833e-2547.06Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL_LILLO4.429e-2444.92Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL59_SOLLC1.861e-2246.67Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL6_ARATH3.174e-2245.16Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659904 ID=EY659904; Name=EY659904; organism=Citrus sinensis; type=EST; length=890bp
TTTCAAAGAAGGCGCGTCCGCTCATTCTTGACTAGAAAAGAGGAGACATG
GTTATTTCCATGTGGTGAACAATGACTACACTCTCTGGCCCATGTATGCC
ATTGGTGGAAGTGCAAACCCCACCATCAACAGCCAGGGAAACAGATACAA
TGCTCCATTGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGGACACAG
CTGCAAGCCAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGACCTCTTG
CTGAACGGTGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGCTAGCTA
TGCTCGTGCTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGTTGGATCCA
TTACTTCTGGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAGTGCTCA
TAGTATTCATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGAATTTCT
GTTTTGTTTTTCATTTTTCTTCTATATAGTATATCACCTATCCAATTTAT
CCACAATCTGGTCATTGTTTCAATCTCTACCGTATATCTGCTTCACATAT
TTTGACAAGTGTACATTATTGCACATGTCATTGTATTGCCTCACCCAGTT
TGTTTATCAGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAAAAACAA
ACATTTGCATTCCCAGAAGCAGGTGCGGAAGTGTTGTTCATTTTATTTTC
CCTCTTTGGCCTCTTTTTTCAGCCTCAATTCTCATTTCCTTCTAACTAGC
ACTTGNCTATTTGTGTCCAGTGTCAGTCAGCTGTCAACTGTCAATCTTGG
TCTCTCTACATACTCTCTTTTTCATTTTTGGCTTTTGGGGTTATAGGGTC
GGAATGATTTTGTGCTTTTTCTCCCGCCTCTTTGTTGTGC
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