EY659896

Overview
NameEY659896
Unique NameEY659896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_PERMH (GTP cyclohydrolase 1 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=folE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEVCQ 854
            D   ++ ++++ L+ +GED +REG+K+TP R+ + L E  K Y      + E                     +V+VRD+  +S+C+  LLPF  K H+ Y+P  ++V GLSK   ++  F   P+ Q RLT ++ +
Sbjct:    4 DREKLKRSIRLFLEAIGEDPDREGLKETPDRIVR-LWEEFKSYENFNMTVFEDI--------------GDYNEMVVVRDIQFYSFCEHHLLPFFGKAHIAYIPE-KKVCGLSKLVRVVNKFAYRPQVQERLTAQIAE 124          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_DEHE1 (GTP cyclohydrolase 1 OS=Dehalococcoides ethenogenes (strain 195) GN=folE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPS-GQRVLGLSKSPELLKSFQTTPKPQ 830
            D  AI+ +V+ +L  +GED  REG+K+TP RVA+   E   G  Q+  +++                      +VI++D+  +S C+  LLPF   VH+ Y+P+   RV+G+SK   +++ +   P+ Q
Sbjct:    3 DEQAIKQSVQNMLLAIGEDPEREGLKETPRRVAQMYAELFSGMNQDPAEVLR------------VGYELGHREMVIIKDIPFYSMCEHHLLPFSGVVHIGYIPNIDGRVVGISKLARVVEIYAKRPQIQ 119          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BARBK (GTP cyclohydrolase 1 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=folE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  459 IEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPE-AXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            +E A++ LL  +GE+ +REG+ +TP R+AK  +E   GY ++V +I+ G +F E A  D            VIV+D+  +S+C+  ++P   K HV Y+P  ++++GLSK   ++  F
Sbjct:   24 VEKAIRTLLLWVGENPDREGLLETPKRIAKVYKELFSGYGESVDEIL-GVVFEEVAGYDEP----------VIVKDIFFYSHCEHHMIPIIGKAHVAYLPD-KKIVGLSKIARVVDVF 129          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_MYCPA (GTP cyclohydrolase 1 OS=Mycobacterium paratuberculosis GN=folE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKG-YTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQ-RVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            D    E AV+ LL  +GED +R G+ +TP RVA+A RE   G YT    D V   +F E   +           LV+V+++ L+S C+  L+ F    HV Y+P    RV GLSK   L+  +   P+ Q RLT ++
Sbjct:   19 DQARAEAAVRELLFAIGEDPDRHGLAETPARVARAYREMFAGLYTD--PDSVLNTMFDEEHDE-----------LVLVKEIPLYSTCEHHLVSFHGVAHVGYIPGNDGRVTGLSKIARLVDLYAKRPQVQERLTSQI 142          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_LISW6 (GTP cyclohydrolase 1 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=folE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEVCQL 857
            ++ D   I DAVKV+L+ +GE+  REG+  TP RVA+   E   G  ++   I    +F E   +           LV+V+D+   S C+  L+PF    HV Y+P   RV GLSK   ++      P+ Q R+T  V ++
Sbjct:    2 EQIDKQKIADAVKVILEAVGENPEREGLIDTPMRVARMYEEVFSGLKKD-PSIHFDTIFAEQHEE-----------LVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAGLSKLARVVDDVSKRPQLQERITTTVAEI 130          
The following BLAST results are available for this feature:
BLAST of EY659896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
GCH1_PERMH5.553e-1130.66GTP cyclohydrolase 1 OS=Persephonella marina (stra... [more]
GCH1_DEHE15.553e-1131.01GTP cyclohydrolase 1 OS=Dehalococcoides ethenogene... [more]
GCH1_BARBK7.253e-1134.75GTP cyclohydrolase 1 OS=Bartonella bacilliformis (... [more]
GCH1_MYCPA9.473e-1136.50GTP cyclohydrolase 1 OS=Mycobacterium paratubercul... [more]
GCH1_LISW69.473e-1133.33GTP cyclohydrolase 1 OS=Listeria welshimeri serova... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659896 ID=EY659896; Name=EY659896; organism=Citrus sinensis; type=EST; length=885bp
TCAAACAACGCCGCGTCCGAATAATCATTCCCAAAAAACGTATCCTCTTT
CTTTTCCCTTACCCTCTCCCTCTACTGCTTCTGCTCCCTATCTCTTCACA
TCTCTCTTCTTCTCGCTGTTCTTATTGTCTCTGGCTACCTCTTCTTTTCT
TTTTTCCTCTCTCTCCCCTTTTTTTCTTAATTGACAGTTTTACAAAAAAT
TGATTTTTTATTTTTGTGTGTTCCAGAACCAATCTCTTTTCGAGTTTCCA
ATATCAATATCAATATCAATATCAAAGTTGTTTTGTGTGTACTTTTTTGG
GTTTTTGATTGGTTTGTTTATCTGGGTTGTTGTTATTTTGTGTGTCTCTC
AATCAAATGGGCGCTTTGGATGAGGGACATTTCGATTTGGAGCTTGAGAA
TGGAGTGAAACTGAGTAGCCTTGAGCTTGGCTTTGAGCAAGAACCAGACG
CGCTCGCTATTGAGGATGCCGTCAAAGTTCTCTTGCAAGGATTAGGTGAA
GATATTAATAGAGAAGGCATCAAGAAGACTCCTCATCGCGTTGCCAAAGC
TCTTCGTGAAGGAACCAAAGGTTACACACAAAATGTAAAAGACATTGTTG
AAGGTGCTTTGTTCCCTGAAGCANGTGTGGATCATGGAATTGGTCATGCC
GGAGGAGCAGGTGGGCTTGTGATTGTTCGAGATCTTGACCTCTTCTCATA
CTGCCAGTCTTGTTTGCTTCCTTTTCAGGTTAAAGTTCATGTANGCTATG
TGCCATCTGGTCAACGAGTTTTGGGATTAAGCAAGTCTCCAGAGTTGCTG
AAGTCTTTTCAAACGACTCCAAAACCACAGCGTCTAACAGATGAAGTGTG
TCAGCTTTGCACATGGTATCAGCCGGGCAGTGTTG
back to top