EY659896

Overview
NameEY659896
Unique NameEY659896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_THEEB (GTP cyclohydrolase 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=folE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.126e-18
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  468 AVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEVCQ 854
            AV+ +L  +GED +REG+ KTP RVA+A++  T GY+Q+++ +V GA+F E   +           +V+VRD++ FS C+  +LPF  K HV Y+P+ QRV+GLSK   +++ +    + Q RLT +V +
Sbjct:   49 AVRTILLNVGEDPDREGLLKTPKRVAEAMQFLTSGYSQSLETLVNGAIFDEGHDE-----------MVLVRDINFFSLCEHHMLPFIGKAHVAYIPN-QRVIGLSKLARVVEMYARRLQVQERLTRQVAE 166          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_OSTOS (GTP cyclohydrolase 1 OS=Ostertagia ostertagi GN=gch PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.126e-18
Identity = 51/128 (39.84%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  468 AVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            A   ++  +GED+NR+G+ KTP R AKA+   TKGY Q + DI+  A+F E               +VIVRD+++FS C+  L+PF  KVH+ Y+P+ ++VLGLSK   +++ F    + Q RLT ++
Sbjct:   37 AYSSIISHVGEDVNRQGLLKTPDRAAKAMLYFTKGYEQQLDDILNDAVFDE-----------NHDEMVIVRDIEMFSLCEHHLVPFNGKVHIGYIPN-KKVLGLSKLARIVEMFSRRLQVQERLTKQI 152          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_YEAST (GTP cyclohydrolase 1 OS=Saccharomyces cerevisiae GN=FOL2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.000e-18
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  402 GVKLSSLELGFEQEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNV-KDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            G +  + E   E++     I  A+K +L  LGED+NREG+  TP R AKA+   TKGY  N+  D+++ A+F E               +VIVRD++++S C+  L+PF  KVH+ Y+P+ ++V+GLSK   L + +    + Q RLT ++
Sbjct:   42 GTRQRAEETEEEEKERIQRISGAIKTILTELGEDVNREGLLDTPQRYAKAMLYFTKGYQTNIMDDVIKNAVFEE-----------DHDEMVIVRDIEIYSLCEHHLVPFFGKVHIGYIPN-KKVIGLSKLARLAEMYARRLQVQERLTKQI 180          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_PROVI (GTP cyclohydrolase 1 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=folE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.782e-17
Identity = 49/132 (37.12%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  456 AIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            ++ ++V  LL+G+GED  REG+ KTP RVA++L   T+GY Q+ +++++ A+F E+  +           +V+V+D+D+FS C+  +LPF  K HV Y+P G +++GLSK   +++ F    + Q RLT ++
Sbjct:   43 SMSESVYTLLEGVGEDPEREGLLKTPERVARSLAFLTRGYRQDPEEMLKKAVFTESYDE-----------MVLVKDIDIFSMCEHHMLPFFGKAHVAYIPDG-KIVGLSKLARVVEVFARRLQVQERLTQQI 162          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_CAEEL (GTP cyclohydrolase 1 OS=Caenorhabditis elegans GN=cat-4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.782e-17
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  465 DAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            +A + ++Q +GEDINR+G+ KTP R AKA+   TKGY   + +++  A+F E               +VIV+D+++FS C+  L+PF  KVH+ Y+P+ ++VLGLSK   +++ F    + Q RLT ++
Sbjct:   45 NAYQSIIQHVGEDINRQGLLKTPERAAKAMMAFTKGYDDQLDELLNEAVFDE-----------DHDEMVIVKDIEMFSLCEHHLVPFMGKVHIGYIPN-KKVLGLSKLARIVEMFSRRLQVQERLTKQI 161          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_DROME (GTP cyclohydrolase 1 OS=Drosophila melanogaster GN=Pu PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 5.186e-17
Identity = 60/171 (35.09%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  378 HFDLELENGVKLSSLELGFEQEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEVCQLCTW-YQPGSV 884
            H DLEL++        L     PD   +  + ++LL GLGE+ +R+G+ KTP R AKA+   TKGY Q+++D++ GA+F E               +V+V+D+++FS C+  L+PF  KV + Y+P   ++LGLSK   +++ F    + Q RLT ++    T   QP  V
Sbjct:  125 HHDLELDHKPPTREALL-----PD---MARSYRLLLGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDE-----------DHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPC-NKILGLSKLARIVEIFSRRLQVQERLTKQIAVAVTQAVQPAGV 275          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH12_PSEAE (GTP cyclohydrolase 1 2 OS=Pseudomonas aeruginosa GN=folE2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.186e-17
Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  453 LAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            +++E     +L  LGED+NREG+  TP R AKA++   +GY Q+++++V GALF     +           +V+V+D++L+S C+  LLPF  K HV Y+P+G +VLGLSK   ++  +
Sbjct:    1 MSLEQHYSSILTQLGEDVNREGLLDTPKRAAKAMKYLCRGYQQSLEEVVNGALFSSDNSE-----------MVLVKDIELYSLCEHHLLPFIGKAHVAYIPNG-KVLGLSKVARIVDMY 107          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_HAHCH (GTP cyclohydrolase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=folE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 43/110 (39.09%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  480 LLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            +++ LGED+NREG++ TP R AKA++   +GY Q+++++  GA+F E+  D           +V+V+D++L+S C+  LLPF  + H+ Y+P+G +VLGLSK   ++  F
Sbjct:   12 IIESLGEDVNREGLRDTPKRAAKAMQFLCRGYNQSLEEVTNGAVF-ESDTD----------EMVLVKDIELYSLCEHHLLPFIGRCHIAYIPNG-KVLGLSKFARIVDMF 109          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_ALHEH (GTP cyclohydrolase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=folE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  459 IEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            IE A + +LQ LGED +REG+K TP R AKA+R  TKGY +++  ++ GA+F                 +VIVR+++L+S C+  LLPF  + HV Y+P G +V+GLSK   ++  +
Sbjct:    5 IEAAYRRILQDLGEDPDREGLKDTPARAAKAMRFLTKGYQEDLDQVLNGAVFSS-----------DNDEMVIVRNIELYSLCEHHLLPFIGRAHVAYLPDG-KVIGLSKVARIVDMY 109          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH12_ANASP (GTP cyclohydrolase 1 2 OS=Anabaena sp. (strain PCC 7120) GN=folE2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  426 LGFEQEPDALAIE--DAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            L  +Q P     E   AV+ LL GLGE+ +REG+  TP RV KAL+  TKGY +++ +++ GA+F E               +V++RD+D+FS C+  +LP   + HV Y+P+G +V+GLSK   + + +    + Q RLT ++
Sbjct:   19 LSTQQTPTVTEAEMVQAVRTLLIGLGENPDREGLLDTPKRVVKALQFLTKGYNESLDELLNGAVFTE-----------DANEMVLIRDIDIFSSCEHHILPIIGRAHVAYIPNG-KVIGLSKIARVCEMYARRLQVQERLTLQI 150          
The following BLAST results are available for this feature:
BLAST of EY659896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
GCH1_THEEB6.126e-1840.00GTP cyclohydrolase 1 OS=Thermosynechococcus elonga... [more]
GCH1_OSTOS6.126e-1839.84GTP cyclohydrolase 1 OS=Ostertagia ostertagi GN=gc... [more]
GCH1_YEAST8.000e-1836.42GTP cyclohydrolase 1 OS=Saccharomyces cerevisiae G... [more]
GCH1_PROVI1.782e-1737.12GTP cyclohydrolase 1 OS=Prosthecochloris vibriofor... [more]
GCH1_CAEEL1.782e-1737.98GTP cyclohydrolase 1 OS=Caenorhabditis elegans GN=... [more]
GCH1_DROME5.186e-1735.09GTP cyclohydrolase 1 OS=Drosophila melanogaster GN... [more]
GCH12_PSEAE5.186e-1738.66GTP cyclohydrolase 1 2 OS=Pseudomonas aeruginosa G... [more]
GCH1_HAHCH1.971e-1639.09GTP cyclohydrolase 1 OS=Hahella chejuensis (strain... [more]
GCH1_ALHEH1.971e-1641.03GTP cyclohydrolase 1 OS=Alkalilimnicola ehrlichei ... [more]
GCH12_ANASP1.971e-1636.81GTP cyclohydrolase 1 2 OS=Anabaena sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659896 ID=EY659896; Name=EY659896; organism=Citrus sinensis; type=EST; length=885bp
TCAAACAACGCCGCGTCCGAATAATCATTCCCAAAAAACGTATCCTCTTT
CTTTTCCCTTACCCTCTCCCTCTACTGCTTCTGCTCCCTATCTCTTCACA
TCTCTCTTCTTCTCGCTGTTCTTATTGTCTCTGGCTACCTCTTCTTTTCT
TTTTTCCTCTCTCTCCCCTTTTTTTCTTAATTGACAGTTTTACAAAAAAT
TGATTTTTTATTTTTGTGTGTTCCAGAACCAATCTCTTTTCGAGTTTCCA
ATATCAATATCAATATCAATATCAAAGTTGTTTTGTGTGTACTTTTTTGG
GTTTTTGATTGGTTTGTTTATCTGGGTTGTTGTTATTTTGTGTGTCTCTC
AATCAAATGGGCGCTTTGGATGAGGGACATTTCGATTTGGAGCTTGAGAA
TGGAGTGAAACTGAGTAGCCTTGAGCTTGGCTTTGAGCAAGAACCAGACG
CGCTCGCTATTGAGGATGCCGTCAAAGTTCTCTTGCAAGGATTAGGTGAA
GATATTAATAGAGAAGGCATCAAGAAGACTCCTCATCGCGTTGCCAAAGC
TCTTCGTGAAGGAACCAAAGGTTACACACAAAATGTAAAAGACATTGTTG
AAGGTGCTTTGTTCCCTGAAGCANGTGTGGATCATGGAATTGGTCATGCC
GGAGGAGCAGGTGGGCTTGTGATTGTTCGAGATCTTGACCTCTTCTCATA
CTGCCAGTCTTGTTTGCTTCCTTTTCAGGTTAAAGTTCATGTANGCTATG
TGCCATCTGGTCAACGAGTTTTGGGATTAAGCAAGTCTCCAGAGTTGCTG
AAGTCTTTTCAAACGACTCCAAAACCACAGCGTCTAACAGATGAAGTGTG
TCAGCTTTGCACATGGTATCAGCCGGGCAGTGTTG
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