EY659896

Overview
NameEY659896
Unique NameEY659896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_PORG3 (GTP cyclohydrolase 1 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=folE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 52/139 (37.41%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  435 EQEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            E+E     ++     +L  LGED  REG+ KTP RVAKA++  TKGY ++ + I+  A+F E               +VIV+D+D FS C+  +LPF  K HV Y+P+ + + GLSK P ++  F    + Q RLT ++
Sbjct:    5 EKEEACSRLQQHYAQVLSLLGEDPKREGLLKTPLRVAKAMQFLTKGYNEDPEAILRAAMFEE-----------DYQQMVIVKDIDFFSMCEHHMLPFFGKAHVGYIPN-RYITGLSKLPRVVDVFARRLQVQERLTTQI 131          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_PARD8 (GTP cyclohydrolase 1 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=folE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  456 AIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            A+    K +L  LGED+ REG+ KTP RVAKA++  TKGY ++ + ++  A+F E               +VIV+D+D FS C+  +LPF  K HV Y+P  + + GLSK P ++  F
Sbjct:   14 ALAGHYKEVLGLLGEDVEREGLLKTPERVAKAMQFLTKGYHEDPEAVLRSAMFQE----------EDYKQMVIVKDIDFFSLCEHHMLPFFGKAHVAYIPK-KYITGLSKIPRVVDIF 120          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_DESRM (GTP cyclohydrolase 1 OS=Desulfotomaculum reducens (strain MI-1) GN=folE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 51/135 (37.78%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            D   IE AVK++L+ +GED NREG+++TP RVA+  +E   G  ++ ++ + G  F E   +           +VIV+D+ LFS C+  L+PF  K HV Y+P    V GLSK   L+  +   P+ Q RLT ++
Sbjct:    3 DLPKIEKAVKMILEAIGEDPNREGLEETPARVARMYQEIFAGLGEDPEEHL-GKTFSEEHEE-----------MVIVKDIRLFSMCEHHLIPFIGKAHVCYIPRNGNVTGLSKLARLVNGYARRPQLQERLTKQI 125          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_CARHZ (GTP cyclohydrolase 1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=folE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            D   IE AV+++L+ +GED +REG+K TP RVA+   E   G +Q+  + +E     E               +V+V+D+ L+S C+  LLPF  K HV Y+P   +V GLSK   +++ F   P+ Q RLT ++
Sbjct:    3 DKEKIEIAVRMILEAIGEDPDREGLKDTPKRVARMYEEVFAGLSQDPSEHLERYFTEE------------HEEMVLVKDIPLYSMCEHHLLPFYGKAHVAYIPRKGKVTGLSKLARVVEGFAKRPQLQERLTSQI 125          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BIFLD (GTP cyclohydrolase 1 OS=Bifidobacterium longum (strain DJO10A) GN=folE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEVCQLCTWY 869
            D   + +AV++ L+ +GED  REG+ +TP R+A+A RE   G   +  D++E        VD           LV+V+D++L+S C+  LLPF    HV Y+P+   V+GLSK   L++ +   P+ Q RLT ++      Y
Sbjct:   16 DEEGVREAVRLFLKSIGEDPGREGLVETPDRIARACRELFAGLQASPADVLE----KHFDVDTDE--------LVLVKDIELYSVCEHHLLPFHGVAHVGYIPAKDGVMGLSKLARLVEVYARRPQVQERLTQQIADALVEY 145          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH12_PSEPK (GTP cyclohydrolase 1 2 OS=Pseudomonas putida (strain KT2440) GN=folE2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  480 LLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            +L G+GE+  REG+  TP R AKA++    GY Q++ ++V GALF E+  D           +++VRD++L+S C+  +LPF  K HV Y+P+G RVLGLSK   ++  F
Sbjct:   12 ILVGIGENPQREGLLDTPRRAAKAMQYLCNGYAQDLHEVVNGALF-ESEND----------EMIVVRDIELYSLCEHHMLPFIGKAHVAYLPTG-RVLGLSKVARVVDMF 109          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_LEPBL (GTP cyclohydrolase 1 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=folE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 44/131 (33.59%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  459 IEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            +E+ +  +L+ +GED  REG+  TP RV KA    T GY  ++  +V GA+F E+              +++VRD++++S C+  LLPF  + HV Y+P+ ++++G+SK P ++  F    + Q RLT+++
Sbjct:    1 MEENIVNILKSIGEDPTREGLLNTPKRVKKAYDFLTSGYHVDITKVVNGAIFEES-----------TEGMILVRDIEVYSLCEHHLLPFYGRAHVAYLPN-KKIIGISKIPRIVDVFARRLQVQERLTEQI 119          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_LEPBJ (GTP cyclohydrolase 1 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=folE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 44/131 (33.59%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  459 IEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEV 848
            +E+ +  +L+ +GED  REG+  TP RV KA    T GY  ++  +V GA+F E+              +++VRD++++S C+  LLPF  + HV Y+P+ ++++G+SK P ++  F    + Q RLT+++
Sbjct:    1 MEENIVNILKSIGEDPTREGLLNTPKRVKKAYDFLTSGYHVDITKVVNGAIFEES-----------TEGMILVRDIEVYSLCEHHLLPFYGRAHVAYLPN-KKIIGISKIPRIVDVFARRLQVQERLTEQI 119          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH11_PSEPK (GTP cyclohydrolase 1 1 OS=Pseudomonas putida (strain KT2440) GN=folE1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  450 ALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++++E     +L  +GED++REG+  TP R AKA++   +GY Q ++++   ALF     +           +V+VRD++L+S C+  +LPF  K HV Y+P G +VLGLSK   ++  +
Sbjct:    9 SMSLEQNYTEILSQIGEDVSREGLLDTPKRAAKAMKYLCRGYEQTLEEVTNNALFSSDNSE-----------MVLVRDIELYSMCEHHMLPFIGKAHVAYLPKG-KVLGLSKVARIVDMY 116          
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_SULSY (GTP cyclohydrolase 1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=folE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  447 DALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSFQTTPKPQ-RLTDEVCQ 854
            D   IE A+++ L+G+GED NREG++ TP RVAK   E       N+    E   + E               +V+VRD+  +S C+  LLPF  K HV Y+P  ++V GLSK   ++  F   P+ Q RLT E+ +
Sbjct:    4 DKNKIEQAIRLFLEGIGEDPNREGLRDTPKRVAKMWEEFESYREMNMTIFEEVGSYDE---------------MVVVRDIQFYSLCEHHLLPFFGKAHVAYIPD-KKVCGLSKIVRVVNKFSYRPQVQERLTAEIAE 124          
The following BLAST results are available for this feature:
BLAST of EY659896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
GCH1_PORG32.845e-1537.41GTP cyclohydrolase 1 OS=Porphyromonas gingivalis (... [more]
GCH1_PARD82.845e-1539.83GTP cyclohydrolase 1 OS=Parabacteroides distasonis... [more]
GCH1_DESRM2.845e-1537.78GTP cyclohydrolase 1 OS=Desulfotomaculum reducens ... [more]
GCH1_CARHZ3.716e-1536.30GTP cyclohydrolase 1 OS=Carboxydothermus hydrogeno... [more]
GCH1_BIFLD3.716e-1534.51GTP cyclohydrolase 1 OS=Bifidobacterium longum (st... [more]
GCH12_PSEPK3.716e-1541.82GTP cyclohydrolase 1 2 OS=Pseudomonas putida (stra... [more]
GCH1_LEPBL8.279e-1533.59GTP cyclohydrolase 1 OS=Leptospira borgpetersenii ... [more]
GCH1_LEPBJ8.279e-1533.59GTP cyclohydrolase 1 OS=Leptospira borgpetersenii ... [more]
GCH11_PSEPK8.279e-1535.00GTP cyclohydrolase 1 1 OS=Pseudomonas putida (stra... [more]
GCH1_SULSY1.081e-1436.50GTP cyclohydrolase 1 OS=Sulfurihydrogenibium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659896 ID=EY659896; Name=EY659896; organism=Citrus sinensis; type=EST; length=885bp
TCAAACAACGCCGCGTCCGAATAATCATTCCCAAAAAACGTATCCTCTTT
CTTTTCCCTTACCCTCTCCCTCTACTGCTTCTGCTCCCTATCTCTTCACA
TCTCTCTTCTTCTCGCTGTTCTTATTGTCTCTGGCTACCTCTTCTTTTCT
TTTTTCCTCTCTCTCCCCTTTTTTTCTTAATTGACAGTTTTACAAAAAAT
TGATTTTTTATTTTTGTGTGTTCCAGAACCAATCTCTTTTCGAGTTTCCA
ATATCAATATCAATATCAATATCAAAGTTGTTTTGTGTGTACTTTTTTGG
GTTTTTGATTGGTTTGTTTATCTGGGTTGTTGTTATTTTGTGTGTCTCTC
AATCAAATGGGCGCTTTGGATGAGGGACATTTCGATTTGGAGCTTGAGAA
TGGAGTGAAACTGAGTAGCCTTGAGCTTGGCTTTGAGCAAGAACCAGACG
CGCTCGCTATTGAGGATGCCGTCAAAGTTCTCTTGCAAGGATTAGGTGAA
GATATTAATAGAGAAGGCATCAAGAAGACTCCTCATCGCGTTGCCAAAGC
TCTTCGTGAAGGAACCAAAGGTTACACACAAAATGTAAAAGACATTGTTG
AAGGTGCTTTGTTCCCTGAAGCANGTGTGGATCATGGAATTGGTCATGCC
GGAGGAGCAGGTGGGCTTGTGATTGTTCGAGATCTTGACCTCTTCTCATA
CTGCCAGTCTTGTTTGCTTCCTTTTCAGGTTAAAGTTCATGTANGCTATG
TGCCATCTGGTCAACGAGTTTTGGGATTAAGCAAGTCTCCAGAGTTGCTG
AAGTCTTTTCAAACGACTCCAAAACCACAGCGTCTAACAGATGAAGTGTG
TCAGCTTTGCACATGGTATCAGCCGGGCAGTGTTG
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