EY659879

Overview
NameEY659879
Unique NameEY659879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13760 contig Csv1_Contig13760:1019..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 52/89 (58.43%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 52/89 (58.43%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 52/89 (58.43%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 51/89 (57.30%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  236 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 2
Query:  227 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            D    +  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++    ++K++IK+HGF
Sbjct:   17 DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 2
Query:  254 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of EY659879 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.819e-25
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  254 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 502
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
The following BLAST results are available for this feature:
BLAST of EY659879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE8.675e-2960.67Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA8.675e-2960.67Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN8.675e-2960.67Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB9.591e-2858.43Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN9.591e-2858.43Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN9.591e-2858.43Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE1.253e-2757.30Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_YEAST3.411e-2554.35Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ANOGA3.411e-2560.24Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME5.819e-2559.04Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-B02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659879 ID=EY659879; Name=EY659879; organism=Citrus sinensis; type=EST; length=599bp
AAAGAGGCGTNCGNTGTACCATTTCCCAAAAAAGAGTTATACGAATCCGA
TTTAGGGTTTCTTTTTGATCTTATCAGATCGGCCCATCTCGATTATTAAA
CCCTAATCTTCGGATCAGGTCTGAGCATTCCGGTTGTTGGGCCCCTTGCA
TCAGCTGAGGTTCATGTCTGATTTTGATATCCAGGTTCCTGCTGCCTTTG
ACCCGTTTGCTGATGCAAAGGCTGAGGACTCAGGTGCTGGTTCAAAAGAG
TATGTGCATATCCGTGTTCAGCAACGGAATGGTAGGAAAAGCCTGACAAC
TGTCCAGGGGTTGAAGAAAGAATTTAGTTACAACAAAATCCTCAAGGACC
TCAAAAAGGAATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTA
GGACAGGTCATTCAACTCCAAGGTGACCAGCGGAAGAATGTATCTACGTT
CCTTGTTCAGGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCT
TTTAAGTAAACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCG
TCAGTGCAGTGCAGAACATGCTATTGATACTATTAAAAAAAAAAAAAAA
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