EY659878

Overview
NameEY659878
Unique NameEY659878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659878 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.466e-31
Identity = 66/167 (39.52%), Postives = 100/167 (59.88%), Query Frame = 2
Query:   17 RIKLCP*RSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNP 496
            R+KL    ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+R + N G   + +P ++PM +Y T+W+  +WAT+GG   +++  APF     D ++ GC V   ++  S P
Sbjct:   89 RLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGP 253          

HSP 2 Score: 21.1718 bits (43), Expect = 8.466e-31
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 1
Query:  577 MIYDYCTG*SRYPVPP 624
            M Y YC+   RY V P
Sbjct:  291 MFYSYCSDKPRYKVMP 306          
BLAST of EY659878 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.216e-25
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 2
Query:   14 VRIKLCP*RSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWW 508
            VRIK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW
Sbjct:   70 VRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW 224          

HSP 2 Score: 23.0978 bits (48), Expect = 1.216e-25
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  574 HMIYDYCTG*SRYPVPP 624
            ++ YDYC+   RYP  P
Sbjct:  244 YLDYDYCSDRQRYPKVP 260          
BLAST of EY659878 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.691e-11
Identity = 54/168 (32.14%), Postives = 75/168 (44.64%), Query Frame = 2
Query:   14 VRIKLCP*RSAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGN 502
            VR+K    ++ G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R        ++  +  YY +   +  P P P    S P N
Sbjct:  108 VRMKAA--KNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEWLGRYDGRTPLQAEYEYVKYYPNGVPQDNPTPTPTIAPSTPTN 265          
The following BLAST results are available for this feature:
BLAST of EY659878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH33_ARATH8.466e-3139.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.216e-2539.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTH2.691e-1132.14Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659878 ID=EY659878; Name=EY659878; organism=Citrus sinensis; type=EST; length=932bp
TCCTAAAAGACGCGTCCGGATCAAGCTCTGCCCCTGAAGATCTGCTGGAA
CTGTCACTGCATTTTATATGAATTCCAACACCGAAAATGTCCGAGACGAG
CTTGATTTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCA
GACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACC
TCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAAC
CATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAA
AAACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATT
CGACGCTGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAA
ATAGATTGGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGATAT
TGAGGGCTGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGGTA
ACTGGTGGGAGGCTAATAATTATCAAGCCCTCACCGCCATGGAAGCATGA
AGATACTGATGGGTTCGTCTCACCACATGATCTATGATTATTGCACTGGA
TAATCACGATACCCAGTACCCCCACCGAGAATGCTTGCCGGGATATCAAT
TCGACCGTCGATTAATTCAGCAGATGGACGGTAGCTCATATCCGGATGCT
ATCATGCATATTACTTCACGTACACGTCCTTTGGAGTCATCCTATTCAGG
GGAAAGACTTTACGCATATCCAGGGAAGGGCAGGAGGAAAATAAACAGTG
TGGGCTTTTAATGCAATATTGGAGTGGAAAAATGTGGGAATTCGATCCCT
TCGTCAAAATAAGCCGGATTTCCGCCCAGATCCGGGCAAATAAAACCGTT
CTATTGGGATAACCAAATGGGTCAAAAAAAGG
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