EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            A  KL  A+LLCI+V AP   A ITCG V+  LAPCI +L+ G       CC G+++LN AA TTPDR+ AC CLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  124 LLLCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            L++C++V AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAAC CLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   12 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  124 LLLCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            L++C++V AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAAC CLK A  SI  +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            ITCGQV+ +LAPCI +++ GG  PP  CCNG+R++N  ARTT DR+AAC CLKQ   SIPG+N N AA LP +CGV++PYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.331e-27
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  103 AFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A +    L+L + + A V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +SI G+N + A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.331e-27
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            K+   ++LC++V AP   A++CGQV   LAPC+ +L+  GR P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVVLCMVVVAPHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            K+   +LLC++V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            K+   ++ C++V AP   +++CG+VT  LAPC+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:    6 KIACFVVFCMVVVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            KL   +L C++V  P+T+  A++CG V+G +APCI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    6 KLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   97 MAAFKLERALLLCILVTAPVTN---AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            MA   +  A++  ++V    T    AI+CGQV+ ++A C+++ R  G  P   CC+GVRSLN AARTT DR+AAC CLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:    1 MARLAVAIAVVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP_SPIOL1.944e-2755.26Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP6_LENCU1.944e-2756.07Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU1.944e-2756.07Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUDO1.944e-2759.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP3_ARATH4.331e-2749.56Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_TOBAC4.331e-2752.25Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_SOLPN5.656e-2753.15Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_SOLLC7.387e-2752.25Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_BRANA7.387e-2753.10Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_SORBI7.387e-2751.28Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
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