EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   94 LMAAFKLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSI-PGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            +    KL   LL C++V  P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ AC C++ A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:    1 MAGVMKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  133 CILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            C++ +A   +AI+CGQVT  L PC  +L  GG  PP  CCNGVR LN AA+TTPDRQ AC CLK    +   IN N A  LP +CG+SI YKI+PN DCS++
Sbjct:   15 CMVFSASYADAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            KL   +  C++V  P+T+  A++CG V+G +APCI +L       P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:    6 KLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   94 LMAAFKLERALLLCILVTAPVT--NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSI-PGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            +    KL   +L C++V  P+T   A+TCG V  ++APCI ++  GG  P   CC GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:    1 MAGVMKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            K+   +LLC++V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.666e-26
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  103 AFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A +     +L + + A V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N + A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.788e-26
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            KL   +L C++V  P+    A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    6 KLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  124 LLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            +++ +L+ AP  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  +  AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   14 MVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.167e-26
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  121 ALLLCILVTAP-VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANA--AAGLPRQCGVSIPYKISPNTDCSRVR 441
            A++ C+ V  P    A++CGQV  +L PCI ++  GG   P  CC GVRSL   A+TT DRQ+ C CLKQA   IP  NANA  AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:   15 AVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.167e-26
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            KL   +L C++V  P+    A++CG V+G+LA CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:    6 KLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP1_ARATH7.387e-2748.74Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_GERHY9.648e-2754.90Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPD_BRAOT1.260e-2650.44Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTPA_BRAOT1.260e-2647.90Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP2_SOLCI1.260e-2653.15Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP4_ARATH3.666e-2649.56Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTPB_BRAOT4.788e-2652.21Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP4_ORYSJ6.254e-2650.48Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP3_PRUDU8.167e-2653.64Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP3_BRANA8.167e-2651.33Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
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