EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  121 ALLLCILVTAP-VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AL+  +L+ AP    AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ AC CLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   10 ALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  121 ALLLCILVTAP-VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AL+  +L+ AP    AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ AC CLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   10 ALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            KL   +L C++V  P+    A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    6 KLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  121 ALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AL+  +L+  P T   AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ AC CLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   10 ALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.053e-25
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            AA +L    L+  ++      AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:    5 AASQLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  121 ALLLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            AL+  ++++AP+  A I+CG V+G+L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AAC CLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:   11 ALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  121 ALLLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            AL++C++V AP+  A ++CG VTG LAPCI +L TGG  P   CC GV+ L  AA TT DRQAAC CLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   11 ALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AA +L    ++  ++      AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC CLK    SI GIN    +G+P +CGVS+P+ IS +TDC++V
Sbjct:    5 AATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  136 ILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            +L+  P T   AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ AC CLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   16 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            AA +L    ++  ++      AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:    5 AATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP1_ORYSJ1.067e-2554.21Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.067e-2554.21Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_BRANA1.067e-2551.33Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLT2B_ORYSJ1.067e-2553.70Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT41_HORVU4.053e-2547.37Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP1_LENCU6.914e-2550.00Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP3_LENCU9.030e-2552.78Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP3_HORVU9.030e-2546.02Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP2_ORYSI9.030e-2554.37Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT43_HORVU9.030e-2546.49Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
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