EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            AA +L    ++  ++      AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:    5 AATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  136 ILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            +L+  P T   AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ AC CLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   16 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  103 AFKLERALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            + KL   ++LC+LV AP+   AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  IN   AAGLP QC V IPYKISP+ DC RV+
Sbjct:    6 SLKLACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.984e-24
Identity = 55/106 (51.89%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  124 LLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            LLL  L+     +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ AC CLK       G+NA   AG+P +CGV+IPY I   TDC++VR
Sbjct:   11 LLLAFLIGT--ASAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   94 LMAAFKLERALLLCILVTAPVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSI-PGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            +    KL   +L C++V  P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:    1 MAGVMKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.955e-23
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            ++CG V   LAPCI +LR+ G  P   CCNGV++L  +A TT DR+ AC CL  A +SI G+N   AAGLP +CGV+IPYKISP+T+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.104e-22
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C CLK A  ++ GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.883e-22
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPG-INANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AA KL    L+  ++      AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:    5 AATKLALVALVAAMLLVAADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  163 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYC-LKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AI+CGQV+ ++ PC+A+ R  G  P   C +GVRSLN AARTT DR+AAC C LK A   + G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSI-PGINANAAAGLPRQCGVSIPY--KISPNTDCS 432
            KL   + + ++   P+T   A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:    6 KLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLT42_HORVU9.030e-2546.49Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT2A_ORYSJ9.030e-2554.37Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP6_GOSHI7.645e-2450.43Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
SCA_LILLO9.984e-2451.89Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP2_ARATH2.224e-2348.74Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP5_VITSX4.955e-2354.95Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP1_PHAAU1.104e-2253.85Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP8_HORVU1.883e-2246.49Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP_ELECO2.459e-2253.76Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP7_ARATH2.459e-2246.49Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
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