EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  109 KLERALLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPG-INANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            KL   +++C+LVTAP+ +  AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:    6 KLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.345e-22
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            ++CG V   +A CI +LR  G  P   CCNGV++L  +A TT DR+ AC CL  A ++I G+N   AAGLP +CGVSIPYKISP+T+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   91 ILMAAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            +LMAA     AL+L +        A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  C CLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:    7 LLMAA-----ALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  124 LLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            ++L I + +P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G+N +  A LP  CGVSIPY IS +T+C  +
Sbjct:   12 IVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-19
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  121 ALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            A++   +V    + A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   15 AVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-19
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  121 ALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            A++   +V    + A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   15 AVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  121 ALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AL+L +        AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+AC CLK   R I  +N + A  +P +CGV++PY IS N DCSRV
Sbjct:    9 ALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.404e-19
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  163 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ AC C+K A +    +N   AA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.404e-19
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  163 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ AC C+K A +    +N   AA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.069e-17
Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  118 RALLLCILVTAPVT---NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            + LLL I +   +     AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ AC CLK    +IPGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   10 KMLLLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP5_ARATH7.155e-2250.00Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP3_VITSX9.345e-2252.75Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP1_HORVU3.551e-2143.10Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTPC_ARATH1.349e-2045.71Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ1.492e-1939.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.492e-1939.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT4.341e-1943.40Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP_AMACA7.404e-1946.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP7.404e-1946.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPB_ARATH1.069e-1743.64Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
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