EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  163 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            AITC  VTG+L PC+ +LR+GG+ P P CC G + L GA RT  DR+ AC C K A   +  +  + A+ LP +CG+S    I+PN +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            + CGQV  SLA CI FL  G   P   CC GV++L   A T+ DR+AAC C+K A    P I  +AA+ LP++CGV I   IS  T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.912e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   97 MAAFKLERALLLCILVTA--------PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVS-IPYKISPNTDCSRV 438
            MA  K+  A+ +  LV          PV  AI+C QV  ++ PC  +L      P   CC  +R L+   + TPDRQA C CLK   +S  G+    AA LP  C V+ +   ISPN DCS+V
Sbjct:    1 MAVKKMVEAVFVVGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  112 LERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYR--SIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            L   LLL  +       AI+C  V  +L PC+ ++  GG  P   CCNG+R L+  A +  D+Q  C C+K      S   I    AA LP +CGV +PYKI P+T+C+ ++
Sbjct:    6 LPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  160 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            +AI+C  V   L PC+++L +G   PP  CC+GV+SL  A  T+ D++AAC C+K    S+  +    A  L   CG S+P   SP  DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  118 RALLLCILVTAPV---TNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSI---PGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            R+LLL + +   +     A++C  V   L PC++++  GG  P   CCNG+ +L   A+T+ DRQ  C C+K A   +   P    NA   LP +CGV +PYK SP+TDC  ++
Sbjct:    2 RSLLLAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALE-LPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            + CGQV  +L+ C+ FL      P   CC GV  L   A T  D++ AC C+K A    P I  +AA+ LP +CGV I   IS  T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.953e-11
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  139 LVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPY-KISPNTDCSRV 438
            L +AP      CG+V   + PC+ F++   + P   CC+G + L+   +TT  ++ AC C+  A + I GI     A +P++CG++     I+ + DCS++
Sbjct:   24 LASAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 31/90 (34.44%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  169 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISP---NTDC 429
            TCG V G+L PC+ F++   + P   CC+G + L+G  +T P R  AC C++ A ++   I+    + +P+ CG+ +  K+ P   N DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP1_HELAN2.382e-1744.57Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO1.182e-1646.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA2.912e-1538.21Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPA_ARATH3.803e-1537.50Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP8_ARATH3.803e-1539.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP6_ARATH6.487e-1537.72Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPB_RICCO1.353e-1239.56Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT22_PARJU1.953e-1130.69Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT13_PARJU3.331e-1134.44Probable non-specific lipid-transfer protein 1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
back to top