EY659870

Overview
NameEY659870
Unique NameEY659870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.340e-15
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK       +T + +  K +D+L
Sbjct:   64 KKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRL 158          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.892e-15
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   39 NPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAY 320
            NPK  A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI      ++  K T     + A+
Sbjct:   86 NPK-FARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAF 178          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.736e-13
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E    E   +T++ K+F A+  L
Sbjct:   87 RRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTL 179          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.736e-13
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   54 APTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIA 257
            A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++
Sbjct:   91 ARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLS 158          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: FIMB_SCHPO (Fimbrin OS=Schizosaccharomyces pombe GN=fim1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 35/99 (35.35%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  369 ALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTL 665
            AL+WQMMR N+ + L +L     GK ++D+D++ WAN+     G  S + SF+D S++ G+F L++L  ++   V+++LVT G T   +  + R A+++
Sbjct:  485 ALVWQMMRMNITKTLHSLS--RGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISI 581          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: FIMB_YEAST (Fimbrin OS=Saccharomyces cerevisiae GN=SAC6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 36/107 (33.64%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  372 LLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLVGN-SSMLW 689
            L+WQ+MR N+   +K L   S G++++D+ IL+WA  +V   G  S + SFKD++L++  F L++L+ + P  V++ LVT G T      + R A+++     +++W
Sbjct:  512 LVWQLMRRNISITMKTLS--SSGRDMSDSQILKWAQDQVTKGGKNSTIRSFKDQALSNAHFLLDVLNGIAPGYVDYDLVTPGNTEEERYANARLAISIARKLGALIW 616          
The following BLAST results are available for this feature:
BLAST of EY659870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_LUMRU2.340e-1544.4460S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_SCHMA8.892e-1545.7460S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_SCHPO3.736e-1344.2160S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_CAEEL3.736e-1351.4760S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
FIMB_SCHPO2.422e-1235.35Fimbrin OS=Schizosaccharomyces pombe GN=fim1 PE=1 ... [more]
FIMB_YEAST5.965e-1133.64Fimbrin OS=Saccharomyces cerevisiae GN=SAC6 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659870 ID=EY659870; Name=EY659870; organism=Citrus sinensis; type=EST; length=929bp
TTTCAAAACCACGCGTCCGAGGAACTCTTTGCGATAAGAATCCCAAGAAA
CTGGCTCCGACAATTGGTGTTTCAGTCGATCATCGACGCAAGAACCGTTC
TCTTGAGGGTCTTCAATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTA
AGTTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCT
GCCCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCC
CATTGCTCCTGAGAAGCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATA
TGAAGTCCTTCAAGGCTTATGACAAACTCCTTTTTATGAATAACGAATGT
TGGCTTCTTTTCTTTTCAGCATTATTATGGCAAATGATGAGATACAATGT
CCTGCAACTTCTGAAGAACTTGAGATTCCACTCCCATGGGAAGGAAATAA
CTGATGCTGATATTCTGCAATGGGCCAATGCCAAAGTGAGAATCTCAGGA
AGCCAGAGTCACATGAATAGTTTTAAGGATAAGAGTTTGGCAGATGGCAT
CTTTTTTCTTGAGCTACTCAGTGCTGTTCAGCCTAGAGCTGTAAATTGGA
GTCTTGTCACAAAAGGAGTAACGGGTATGTTTTCTTCTAATCATACGCGA
TGTGCGGTTACTTTGGTCGGCAATAGCAGCATGCTTTGGCAAAGAATTTA
GTTTTGACAGTACAATTTGGTTTTATTGTGTGTGATTTTATAATCTAACT
TTTTTCNTATATTCCTTTCGAATTTCATAAATNATGGTGGATAATACTCA
TTCGTTTTGACTTGTTCTTTCTCTTTCAAACTTGGGGAATTTAGATGAGG
AAAAAAAGATGATGCACCTACATATCAGTATTGCAGGAAACTTGGATGCT
CAATATTTTGCTCCCTGAAAACTACTGAG
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