EY659866

Overview
NameEY659866
Unique NameEY659866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.306e-47
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 3
Query:   15 VRLEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++ +E LSYLP LSDE LL EI YLL++GW+PCLEFE E+G+VYRE++SSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   65 INMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.934e-47
Identity = 83/114 (72.81%), Postives = 101/114 (88.60%), Query Frame = 3
Query:   21 LEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ++ FE LSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   55 IKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.934e-47
Identity = 83/114 (72.81%), Postives = 101/114 (88.60%), Query Frame = 3
Query:   21 LEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ++ FE LSYLPPLS EALLK++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:   56 IKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.934e-47
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   15 VRLEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++ +E LSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   65 INMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.711e-47
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 3
Query:   15 VRLEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++ +E LSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   64 INMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.711e-47
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 3
Query:   15 VRLEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++ +E LSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   64 INMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.711e-47
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 3
Query:   15 VRLEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++ +E LSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   64 INMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.495e-46
Identity = 85/115 (73.91%), Postives = 97/115 (84.35%), Query Frame = 3
Query:   21 LEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 365
            L+ FE LSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:   68 LKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.495e-46
Identity = 83/116 (71.55%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   15 VRLEDFENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++ +E LSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   64 INMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY659866 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.953e-46
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 3
Query:   30 FENLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            FE LSYLPPLSD  LL ++ YLL +GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:   69 FETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
The following BLAST results are available for this feature:
BLAST of EY659866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS1_SOLLC2.306e-4772.41Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_HORVU3.934e-4772.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT3.934e-4772.81Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS0_SOLTU3.934e-4770.69Ribulose bisphosphate carboxylase small chain C, c... [more]
RBSC_SOLTU6.711e-4770.69Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU6.711e-4770.69Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU6.711e-4770.69Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_BETVE1.495e-4673.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2A_SOLLC1.495e-4671.55Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3_AMAHP1.953e-4673.87Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659866 ID=EY659866; Name=EY659866; organism=Citrus sinensis; type=EST; length=926bp
TTCGTAAAACACGCGTCCGGCTTGAAGATTTCGAGAATCTCTCATACCTC
CCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCG
CTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGT
ACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
ATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAA
GGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTA
TCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCC
AAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGC
AATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCA
ATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTG
CTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATA
TATTTTAATAATTGAATCCTTTGTTTTCAGTTTCNTTNNNAAANACANNA
ANAAATAANNNANCCCATACCAACAACAAAAAATCCTTANCCNNCCNCTT
TTTCCCCCCCACTTCCCATTTAAACCTCCCACATTACTCTTATTGCCAGC
ATTTAAAAANCTTCAAGGGGGGGGGCACGTCTTTTGGGTCCCCCACTTTT
GGCGGTTGAGGACCTCCCCCCTTTCGCGGGNGGGGCTTTTATTGAAAAAA
CCGCCGGGGCGTCTCTACCCCTGGGGCGGGGGCAAATGTGAAGAGAACGG
CCCGCCTCTCCGCATCTCCCCGCCGTGGGGGGGGTATTCTTGCCTGACAC
CACCTTTTCTACTCTCAAAAAAAAAA
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