EY659845

Overview
NameEY659845
Unique NameEY659845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.425e-15
Identity = 61/205 (29.76%), Postives = 101/205 (49.27%), Query Frame = 1
Query:  253 RVQKLIASQSDPLLAKEIF---DYASRQPN--FRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPV-TPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDM 849
            R+  L+  ++DP  A ++F   D  S  P   FR+S   Y I+I KLG +K F  +D +L+ LK++   V T  +F  +I  +    LP RAL  F  M ++ C+   K LN +L  L+     L    +   S  + G  P+  +YNI++     +G +  A  +  +MV++ V P   ++  L+  LC  S+V  +  +  DM
Sbjct:   11 RLASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALL-KCGELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDM 213          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 57/199 (28.64%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  268 IASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSML-EFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            + SQ D   A  +F+ AS++PNF    + Y  ++L+LGR+  F  +  IL  +KS    +  S F  LI+ YA+  L D  L     M+ EF  KP     NR+L LLV   N L+            G+ P+  ++N++++A C       A  + + M   G++PD +++  +MQ    +  ++ +  + E M   G
Sbjct:   57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV-DGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.053e-14
Identity = 53/224 (23.66%), Postives = 115/224 (51.34%), Query Frame = 1
Query:  292 LAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSML-EFNCKPLPKQLNRILELLVTHRNYLRPA--FDLFKSAHKH-GVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFVQIL*VY-YFVE*VG*KKELREATRLLED 948
            +++++F  A +  +F+  +ST   +I     +  F  ++ +L  ++ E+  +    F  + + Y +++LPD+A+  F  M+ EF CK   K  N +L +++    Y R    +D   +++ +  + PN  S+N++++A C       A  V + M ER  +PD  +Y  LM  LC + +++ +  L ++M ++G      +Y   ++ +  K +L   T+L+++
Sbjct:   59 ISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDN 282          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR87_ARATH (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.682e-14
Identity = 49/206 (23.79%), Postives = 98/206 (47.57%), Query Frame = 1
Query:  265 LIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILI-------TLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            L+ S+ DP    EI   AS  P+ R     +   +  L   K+FS + ++L         LKSE +        + I +YA++N+ D +L+ FR + +F      K LN +L   +  ++Y        +    +G+ P+ ++YN M++ FC +G  S +Y++  +M  +G+ P+  S+ +++     + + +    +   M ++G
Sbjct:   53 LLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAA------HAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRG 252          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.331e-13
Identity = 60/239 (25.10%), Postives = 107/239 (44.77%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE-HYPVTPSLFTYLIKIYAE-SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGV-----------------------------------LPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            V K+  +  DP      + + S++ +++ + S Y ++I K G+AK +  I++++ T+K E     +   F  L++IY   +   +RA++    M +F C P  K  N IL LLV+ + +      +F SA K GV                                    PN  +++ ++R FC  G +  A+ + ++M +  + PD  ++ IL+  L  K +V    DL E M  KG
Sbjct:   65 VLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLF-DEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKG 302          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 46/186 (24.73%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  307 FDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGF 864
            F +  RQP F+H   TY  ++  LGRAK F  I+ +L  +  +        +  LI  Y  +N    A+  F  M E  C+P       +++ +     +L  A D+++   + G+ P+T +Y++++      G    A+ +  +MV +G  P++ ++ I++           +  L  DM N GF
Sbjct:  346 FYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLID-IHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGF 530          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 56/220 (25.45%), Postives = 98/220 (44.55%), Query Frame = 1
Query:  289 LLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFVQIL*VY-YFVE*VG*KKELREATRLLE 945
            +LA  +F +A  Q  F+H+ S Y  LI  LG+ K F LI  ++  +K++   ++   F  + + YA +     A+  F  M EF  K      NR+L+ L   RN +  A  +F    K    P+ KSY I++  +           V ++M + G  PDV +Y I++   C   +   +     +M  +       ++   +  +G +K+L +A    E
Sbjct:  109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRN-VGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFE 326          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.922e-12
Identity = 40/177 (22.60%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  265 LIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILIT-LKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILM 792
            L+ S+++P    EI    S  P++      + + ++ L R K+F  +  +L   ++++  P + S     I +Y  +N+ DR+++TFR++ ++      K LN +L   +  ++Y        +    +G+ P+ ++YN M+R  C +G  S +Y++  +M  + + P   S+ +++
Sbjct:   48 LLKSENNPDRILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMI 224          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.922e-12
Identity = 48/200 (24.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYAS-RQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLF-KSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDM 849
            + +++  Q +P+ A ++F+ A  R P++ H+ S Y  +I  LG++     +  ++  +K +      S+F  +I+ ++ +   + A+  F+S+ EFNC       + +L+ +V   + L  A  +F K  +   V     + N++M+  C      +A  V ++M  +G  PD +SY ILM+  C + ++  ++ L   M
Sbjct:   15 LSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMV-KESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSM 213          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP133_ARATH (Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.922e-12
Identity = 53/202 (26.24%), Postives = 90/202 (44.55%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            +  +I  + +  L    F +ASR+   R S  ++ ++I  L       L    L  LKS    V    F  LI  YA+  + ++A+++F  M EF+C+P     N IL +++    +   AF ++    K    PN  ++ I+M      G  S A  +   M  RG+ P+  +Y IL+  LC +   + +  L  +M   G
Sbjct:   63 ITSVIKDEVNRQLGFRFFIWASRRERLR-SRESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSG 263          
The following BLAST results are available for this feature:
BLAST of EY659845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PPR79_ARATH2.425e-1529.76Putative pentatricopeptide repeat-containing prote... [more]
PP281_ARATH1.204e-1428.64Pentatricopeptide repeat-containing protein At3g53... [more]
PP327_ARATH2.053e-1423.66Pentatricopeptide repeat-containing protein At4g20... [more]
PPR87_ARATH2.682e-1423.79Pentatricopeptide repeat-containing protein At1g61... [more]
PP230_ARATH1.331e-1325.10Pentatricopeptide repeat-containing protein At3g14... [more]
PP123_ARATH5.057e-1324.73Pentatricopeptide repeat-containing protein At1g74... [more]
PP112_ARATH5.057e-1325.45Pentatricopeptide repeat-containing protein At1g71... [more]
PPR33_ARATH1.922e-1222.60Pentatricopeptide repeat-containing protein At1g11... [more]
PPR11_ARATH1.922e-1224.00Pentatricopeptide repeat-containing protein At1g05... [more]
PP133_ARATH1.922e-1226.24Pentatricopeptide repeat-containing protein At1g79... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659845 ID=EY659845; Name=EY659845; organism=Citrus sinensis; type=EST; length=950bp
CACTGGTCGCCTGCAGACCGGTCCGGATTCCCTGCTCAAAGAGGCGTCCG
GAGAATCGCTTACCCAAGAAAACGAGCATTTCTTCGTTCATCCAAAATCG
TCACAACGGTAACTGGAGCACCCACCTTCCCGCCAAAAACTCCATCACTC
ATCTTCTGCTACTCCTCATCTTCCCAAGAATCACCATCCTCACCAGAGCA
ACAACAAGAATCTTCCATTTCAAATTCCAAATCTCCAATCGGGTCTCCAT
GTCGAGTCCAAAAACTGATAGCCTCCCAATCAGACCCTCTCTTAGCCAAA
GAAATCTTCGATTACGCCTCTCGCCAACCCAATTTCCGCCACTCCAATTC
TACGTATCTCATTCTCATCCTCAAACTCGGCCGCGCTAAATACTTCTCTC
TCATTGATGATATTCTCATTACCCTCAAGTCCGAACACTACCCTGTCACC
CCCAGTCTTTTCACTTACTTAATAAAAATATACGCAGAATCCAATTTGCC
TGATAGAGCTCTCAAAACATTTCGCTCAATGCTTGAGTTCAACTGTAAGC
CTTTACCCAAGCAGTTAAATCGCATTCTTGAACTCCTTGTCACTCACCGG
AACTATCTCCGGCCCGCTTTTGATTTATTCAAGAGTGCTCATAAACACGG
TGTTTTGCCCAATACTAAATCCTACAACATCATGATGCGTGCGTTTTGTT
TTAACGGGGGATATAGTATCGCCTACACNGTGNTTAAACAAATGGTTGAG
AGAGGTGTTATGCCTGATGTCGAGTCGTATCNGATTTTGATGCAGGNTTT
GTGTANGAAGAGTCAGGTGAATAGAAGCAGTGATTTGNTGGAGGATATGN
TGAATAAAGGATTTGTACAGATACTTTGAGTATACTACTTTGTTGAATAA
GTTGGGTAGAAAAAAGAACTCCGGGAGGCTACAAGGCTCCTTGAAGATGA
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