EY659845

Overview
NameEY659845
Unique NameEY659845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.281e-12
Identity = 50/188 (26.60%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  307 FDYASRQPNFRH-SNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHR--NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            F++A+ + ++ H S   Y  +I   G+ + F L   ++  +KS +  ++   FT LI+ Y  + L   A+  F  M ++ C P     + ++  L   R  +  +  FD  K   +    P+   Y  ++R +C  G  S A  V K+M   G+ P+V +Y I++  LC   Q++R+ D+  DM + G
Sbjct:  137 FNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE----PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSG 320          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP416_ARATH (Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.281e-12
Identity = 55/194 (28.35%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  307 FDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLP-NTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFVQIL*VY 885
            FD+A R+P       +Y +++  LGR K FS + D+L  +  E         T  +  +   +   RA++ F     F  K   +  N +L  L   R+++  A  +F +  K G +P ++ SYNIM+  +   G       V K+MVE G  PD  SY  L++ L    ++N S ++ +++ +KG V    VY
Sbjct:  138 FDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLC-ERSHVSAAKSVFNA--KKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVY 328          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 59/266 (22.18%), Postives = 112/266 (42.11%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE-HYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFN-----------------------------GGY------SIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFVQIL*VY-YFVE*VG*KKELREATRLL 942
            V  +I  Q DP+ A E+F+   ++  F+H+ STY  +I KLG    F  ++++L+ ++      +   ++   +K Y        A+  F  M  ++C+P     N I+ +LV    Y   A  ++      G+ P+  S+ I M++FC                               GG+      +  Y +  +M+  GV   + ++  L++ LC K  V     L + +  +G +  L  Y  F++ +  + EL  A R++
Sbjct:   10 VTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLV-DSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMV 274          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR2_ARATH (Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.627e-11
Identity = 50/203 (24.63%), Postives = 94/203 (46.31%), Query Frame = 1
Query:  262 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEH---YPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHK-HGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNK 858
            +LI   +D L     FD+ S +  F H   ++ +++  LGRA+  ++  + L +++        +    F  LI+ Y  + L   ++K F++M +    P     N +L +L+  R     A DLF    + +GV P++ ++N ++  FC N     A+ + K M      PDV +Y  ++  LC   +V  + ++   M  K
Sbjct:   76 RLIKVPADGL---RFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLK-RGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKK 273          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.627e-11
Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 1
Query:  448 TPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            T S+F  ++K Y+  +L D+AL            P     N +L+  +  +  +  A ++FK   +  V PN  +YNI++R FCF G   +A T+  +M  +G +P+V +Y  L+   C   +++    L   M  KG
Sbjct:  133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.627e-11
Identity = 46/166 (27.71%), Postives = 76/166 (45.78%), Query Frame = 1
Query:  301 EIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKS-AHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQ 795
            E F  +    +FR  +  Y   I +L  AK FS ID++L   K      +      ++ +Y  S + + A K F  M E NC+   K  N +L   V  +  L  A   FK    K G+ P+  +YN M++A C  G      ++ +++ + G  PD+ S+  L++
Sbjct:   72 EKFKRSCESESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKK-LDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLE 236          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP404_ARATH (Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 58/247 (23.48%), Postives = 103/247 (41.70%), Query Frame = 1
Query:  265 LIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTP------------------SLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFVQIL*VY-YFVE*VG*KKELREATRLLED 948
            L +    P L+   F +    P+ +HS  +   +IL L + K+F     +L  L       +P                   +F++L+  YA++ + + ++  F  +     KP  +    +L  LV  R      + +FK   K GV+ N   YN+++ A   +G    A  +  +M E+GV PD+ +Y  L+   C KS    +  + + M   G    +  Y  F+     +  +REATRL  +
Sbjct:   53 LFSGYGGPSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQR-LTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFRE 298          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 52/199 (26.13%), Postives = 85/199 (42.71%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITL-KSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDM 849
            + +LI  Q     A E F +AS  P F HS STY  L  KL   + F  +  +L  +  S   P   ++F  +I+ +  + L  R +     + +F  KP  K  N IL++LV     +   F   +     G+  +  +Y I+M+           + + + M   GV P+   Y  L+  LC   +V R+  L  +M
Sbjct:   46 IVRLILDQKSASGALETFRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLDEMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKEDIDIAREF-FTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEM 243          
The following BLAST results are available for this feature:
BLAST of EY659845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PPR54_ARATH4.281e-1226.60Pentatricopeptide repeat-containing protein At1g20... [more]
PP416_ARATH4.281e-1228.35Putative pentatricopeptide repeat-containing prote... [more]
PP120_ARATH9.538e-1222.18Putative pentatricopeptide repeat-containing prote... [more]
PPR2_ARATH1.627e-1124.63Pentatricopeptide repeat-containing protein At1g02... [more]
PP407_ARATH1.627e-1128.26Pentatricopeptide repeat-containing protein At5g39... [more]
PP225_ARATH1.627e-1127.71Pentatricopeptide repeat-containing protein At3g13... [more]
PP404_ARATH4.734e-1123.48Pentatricopeptide repeat-containing protein At5g38... [more]
PP160_ARATH8.074e-1126.13Pentatricopeptide repeat-containing protein At2g17... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659845 ID=EY659845; Name=EY659845; organism=Citrus sinensis; type=EST; length=950bp
CACTGGTCGCCTGCAGACCGGTCCGGATTCCCTGCTCAAAGAGGCGTCCG
GAGAATCGCTTACCCAAGAAAACGAGCATTTCTTCGTTCATCCAAAATCG
TCACAACGGTAACTGGAGCACCCACCTTCCCGCCAAAAACTCCATCACTC
ATCTTCTGCTACTCCTCATCTTCCCAAGAATCACCATCCTCACCAGAGCA
ACAACAAGAATCTTCCATTTCAAATTCCAAATCTCCAATCGGGTCTCCAT
GTCGAGTCCAAAAACTGATAGCCTCCCAATCAGACCCTCTCTTAGCCAAA
GAAATCTTCGATTACGCCTCTCGCCAACCCAATTTCCGCCACTCCAATTC
TACGTATCTCATTCTCATCCTCAAACTCGGCCGCGCTAAATACTTCTCTC
TCATTGATGATATTCTCATTACCCTCAAGTCCGAACACTACCCTGTCACC
CCCAGTCTTTTCACTTACTTAATAAAAATATACGCAGAATCCAATTTGCC
TGATAGAGCTCTCAAAACATTTCGCTCAATGCTTGAGTTCAACTGTAAGC
CTTTACCCAAGCAGTTAAATCGCATTCTTGAACTCCTTGTCACTCACCGG
AACTATCTCCGGCCCGCTTTTGATTTATTCAAGAGTGCTCATAAACACGG
TGTTTTGCCCAATACTAAATCCTACAACATCATGATGCGTGCGTTTTGTT
TTAACGGGGGATATAGTATCGCCTACACNGTGNTTAAACAAATGGTTGAG
AGAGGTGTTATGCCTGATGTCGAGTCGTATCNGATTTTGATGCAGGNTTT
GTGTANGAAGAGTCAGGTGAATAGAAGCAGTGATTTGNTGGAGGATATGN
TGAATAAAGGATTTGTACAGATACTTTGAGTATACTACTTTGTTGAATAA
GTTGGGTAGAAAAAAGAACTCCGGGAGGCTACAAGGCTCCTTGAAGATGA
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