EY659844

Overview
NameEY659844
Unique NameEY659844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659844 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 6.066e-59
Identity = 135/284 (47.54%), Postives = 169/284 (59.51%), Query Frame = 1
Query:   67 HHSGWNSCSSCYGDSSALRPFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYQPRHKTMISSSWGAPLAFTKGFNLQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIXXLHDPL*E*GL*VVP*QVHGSXFQTQNDHGIMXVQYQ*NL*RCKI-GYFL-KMQGLLLTF*FPLMIGSL-LSHWLHEEFHRIH*GS-QNPXLTGQSGSGG 903
            HHSGWN+CSSC+GDS+  R  LVLPSL+S RIY+VD    PRA  LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD+E F VKG WE+ G +   GYDFWYQPRH  MIS+ W AP     GFN   V  GLYG HL+V+ W   E+ QTL L   GLIPLEI  LH+P    G            F  +N+ G   V+    +   K+ G+ L +M GL+      L    L  S+WLH +  +      Q P LTGQ   GG
Sbjct:   73 HHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRALKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDAETFEVKGTWERRGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSL-KDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFY-KNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFVGG 353          
BLAST of EY659844 vs. ExPASy Swiss-Prot
Match: SBP_CAEEL (Putative selenium-binding protein OS=Caenorhabditis elegans GN=R11G10.2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.101e-14
Identity = 59/216 (27.31%), Postives = 104/216 (48.15%), Query Frame = 1
Query:   19 PXRNSFSTRASDWRCTHHS------GWNSCSSCYGDSSA-LRPFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLA--SGDILVSCLGDKDGNAEGNGFLLLDSEFNVKGRWEKPGHSPAFGYDFWYQPRHKTMISSSWGAPLAFTKGF---NLQHVSDGLYGRHLFVYSWPDGELKQTLDLGN-TGLIPLEIXXLHD 627
            P   +F T  S+   T +        W   +   G+ +  +R  +++P + SG+IY++  +       + K +   ++++K  +S P+    L      + VS LGD+ GN +G+ F+L+D       +  +P  S  +G DF  QPRH  MISS WG P     GF    L++VS+  +G  L V+     +L Q+++L    G + + +  LH+
Sbjct:  115 PTSETFCTILSEVHLTSNGDEPGRMNWAKSAESLGEMNKFVRRNIIVPCMNSGKIYVIAFENEKLW--IEKEIRNDELIRKD-VSCPYAVRSLPLKGAPVHVSTLGDRFGNGKGD-FILIDRRTWEVRKKSEPTFSD-YGGDFSLQPRHNLMISSEWGHPRLLRDGFMPSELENVSES-FGARLHVWQISPPKLIQSINLDTCDGSLVICVKFLHN 324          

HSP 2 Score: 32.7278 bits (73), Expect = 3.101e-14
Identity = 15/37 (40.54%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  702 WNHXGAISVKSLKVQNWILSENARAITDFLISLDDRF 812
            W       V  LKV+NW   E    +TD +IS+DDR+
Sbjct:  352 WAADRVAHVPLLKVENWQSDEMPALLTDMIISMDDRW 388          
The following BLAST results are available for this feature:
BLAST of EY659844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP1_PONAB6.066e-5947.54Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP_CAEEL3.101e-1427.31Putative selenium-binding protein OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659844 ID=EY659844; Name=EY659844; organism=Citrus sinensis; type=EST; length=946bp
CACTGGTACCCTGCTATACCGGNCCGGAATTCCTTCTCAACACGCGCGTC
CGATTGGCGATGTACACATCATTCGGGATGGAATTCATGTAGCTCATGCT
ATGGAGATTCATCTGCTCTACGGCCTTTTCTTGTCTTGCCTTCTTTGGTA
TCTGGTCGTATATACATAGTTGACACACAAAAAAATCCAAGGGCTCCCTC
TTTGCATAAAGTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTAT
CTTATCCTCACACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCA
TGCCTTGGAGATAAGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCT
TGACTCAGAATTCAATGTGAAAGGAAGATGGGAAAAACCAGGTCACAGTC
CTGCTTTCGGTTATGATTTCTGGTACCAACCTCGACACAAAACAATGATC
AGCTCATCATGGGGAGCACCCCTGGCTTTCACCAAAGGCTTCAACCTTCA
GCATGTCTCTGATGGTCTTTATGGGAGGCATCTGTTTGTGTACAGCTGGC
CGGATGGTGAATTGAAACAGACATTAGATCTTGGTAATACAGGCCTCATA
CCACTGGAGATAANGNTCTTGCATGATCCCCTCTAAGAATAGGGTTTGTA
GGTTGTGCCTTAGCAAGTACATGGTTCGGNTTTTCAAACCCAGAATGATC
ATGGAATCATGANGGTGCAATATCAGTGAAATCTCTGAAGGTGCAAAATT
GGATACTTTCTGAAAATGCAAGGGCTATTACTGACTTTCTGATTTCCCTT
GATGATCGGTTCTTTACTCTCCCACTGGCTCCATGAAGAATTCCACAGAA
TACATTGAGGATCCCAAAATCCTGNATTGACAGGCCAATCTGGGTCGGGG
GGCTGTTCCAAAAGAATCTTGGAGGGGTGTAAAAATGAGGCAACCA
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