EY659830

Overview
NameEY659830
Unique NameEY659830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7614 contig Csv1_Contig7614:1..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.539e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            EKKRRL+V+QV+ LE+SFE  NKLEP R+  LA+ LGLQPRQVAIWFQNRRARWKT
Sbjct:  103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKT 158          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.150e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNSSRR 842
            EKKRRL  +QV+ LE+SFE +NKL+P R+  +A+DL L PRQVA+WFQNRRARWKT    R
Sbjct:   64 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIER 124          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.150e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNSSRR 842
            EKKRRL  +QV+ LE+SFE +NKL+P R+  +A+DL L PRQVA+WFQNRRARWKT    R
Sbjct:   40 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIER 100          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.789e-16
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 3
Query:  615 DENGDEDF-DEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            D NGDE++ D+     EKKRRL ++Q++ LEK FE+ NKLE  R+  LA+ LGLQPRQ+AIWFQNRRAR KT
Sbjct:   54 DMNGDEEYSDDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKT 125          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.180e-14
Identity = 50/102 (49.02%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  555 EDVHLANGSNNRPFFRP-FDRDENGDEDF-DEYFHQPE--------KKRRLTVDQVQFLEKSFEVEN-KLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            E+  L      RPF     D  E   ED  DE +   E        +KRRLT +QV+ LE+SFE E  KLEP R++ LA+ LG+ PRQVA+WFQNRRARWKT
Sbjct:   36 EEAELRRRRRKRPFLTTTHDELELQMEDLVDELYGVDEQGSSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKT 137          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.012e-14
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  663 KKRRLTVDQVQFLEKSFEVEN-KLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            +KRRLT +QV+ LE+SFE E  KLEP R++ LA+ LG+ PRQVA+WFQNRRARWKT
Sbjct:   22 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKT 77          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            ++K+R + +Q++ LE  F  + KLEPR++  LA++LGLQPRQVAIWFQN+RARWK+    R    + + Y++L
Sbjct:   29 DRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDAL 101          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            ++K+R + +Q++ LE  F  + KLEPR++  LA++LGLQPRQVAIWFQN+RARWK+    R    + + Y++L
Sbjct:   29 DRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDAL 101          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  651 HQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            H    +RR + +Q++ LE  FE E +LEPR++  LA++LGLQPRQVAIWFQN+RARWK+
Sbjct:   28 HNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKS 86          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.225e-13
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  618 ENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWK 824
            E G+ + + +F    +KR+L+ +QV+ LE SFE ++KLE  R++ LA +LGL PRQVA+WFQNRRARWK
Sbjct:   50 EEGENEGNGWF----RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 114          
The following BLAST results are available for this feature:
BLAST of EY659830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HOX23_ORYSI2.539e-1776.79Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX8_ORYSJ2.150e-1663.93Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI2.150e-1663.93Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
ATB23_ARATH4.789e-1661.11Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
HOX25_ORYSJ1.180e-1449.02Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX25_ORYSI2.012e-1467.86Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX6_ORYSJ7.646e-1447.95Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX6_ORYSI7.646e-1447.95Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
ATHB7_ARATH9.985e-1457.63Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
ATB21_ARATH2.225e-1353.62Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659830 ID=EY659830; Name=EY659830; organism=Citrus sinensis; type=EST; length=940bp
GTCATCTTATTAACCGGNCCGGAATTCTTTCATAACACGCGCGTCCGTAN
GGGAATTAACAAAAAAAGATCCACTTCCACTTCCACTTCCACTTCCTCTT
CTTCTTGTCCTTTTTCCCCTCAAAAACTTCAAACTTCACACTTCTCCTGA
AACCTCTCACGAAACACTCTTTCAAATCCCTCTATTCTGAGTGATGGGTA
TGAGCAGCCGCTGCTCCCACACATCTCACATAACCGAGATCATAATCACC
AGCTTCTTTCGTCATAAGTCTTAAATTAAATTTCTTCTCGACTGTTGAAT
CATCGCATCATCTTTAGCGATGGCTGCTTAAAAGATTAAGAATATTAGTT
TTAAGTTAAATGGCGGGTGGGAGGATGTATAATCAAAATAGTTCTAGTGG
TGGTGGTAGTGGTGGTGGTACTTCAAGTCTGTCCTTTCTGATTCAAAGCC
AAAAGGGTTCTTGCTCTAACTCTCAGAATCTCGATGCTTCGTTCCTCTCT
GGCCCTTCTCCTTCTCCTTCTCCTTTTCTTGGATCAAGATCCATGGTGAG
CTTTGAAGATGTGCACTTAGCAAATGGATCCAATAACAGGCCATTTTTCC
GCCCATTTGATCGTGATGAAAATGGGGATGAGGACTTTGATGAGTACTTT
CATCAACCTGAAAAGAAAAGACGGCTTACGGTTGATCAAGTCCAGTTTCT
TGAAAAAAGCTTCGAGGTAGAGAACAAGCTTGAACCCCGAAGGGAAAATT
CACTGGCAAAAGACCTTGGCTTGCAGCCTAGACAGGTTGCGATTTGGTTC
CAAAACCGCCGGGCTCGTTGGAAGACTAACAGCTCGAGAAGGATACGATG
TATTGCAAACAGCTATAATAGCTTAGGGCGATATGACATCTCTTCAAGAG
AAGAAAGCTAAAGCTGAGGTCTTAGCTCACGACAGCTGCA
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