EY659829

Overview
NameEY659829
Unique NameEY659829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  SSIFD  AGIAL+K FVKL+SWYDNEWGYS R  DL+ + AK
Sbjct:  285 FTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWGYSRRCCDLLGYAAK 332          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            GD  S IFDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI ++A
Sbjct:  287 GDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   20 SSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            SS FDA+AGI+L+ +FVKLV+WYDNEWGYS RV DL+VH+AK
Sbjct:  338 SSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVAK 379          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+MA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            F+ D+ SS+F+ KAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F  DS SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  284 FNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+MA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            F G+  SSIFDAKAGIAL+  FVKLV+WYDNE+GYS RVVDL+ +M
Sbjct:  390 FNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLLRYM 435          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GD+ SSIFDA AGI L+  F K+V+WYDNEWGYS RVVDL++ M + +
Sbjct:  289 FQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMVQKE 338          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query:   11 DSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  289 DTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
The following BLAST results are available for this feature:
BLAST of EY659829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3P_PHACH2.310e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_COCP72.310e-1268.89Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PA_GUITH2.310e-1273.81Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_MUSPF3.017e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_DROHY3.017e-1265.22Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_CRIGR3.017e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CANFA3.017e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3PT_MOUSE3.017e-1271.74Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_ANASP3.017e-1262.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_PONAB3.940e-1268.09Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659829 ID=EY659829; Name=EY659829; organism=Citrus sinensis; type=EST; length=341bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGNTGTGCTAAG
TGTGGTGTTTCTTTGCGCTNAATGTGGTGTTTGTGTTTCTATGTAGAAGG
TCTGAGTTTAAATAAATTGTTTCCAGACATTTATCAGAGCCTACCTGCTC
ATGCAGGGTGTGCTTAGATTTTCCCTTGTANNATGCAGAGA
back to top