EY659829

Overview
NameEY659829
Unique NameEY659829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.721e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F  D RSSIFDA AGI L+  F K+VSWYDNEWGYS RV+DL++ MA
Sbjct:  287 FRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F GD+R+SIFDA+AGIAL   F+K+VSWYDNEWGYS +V+++   +AK
Sbjct:  285 FRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVAK 332          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            F+GD+ SS+FDA AGI+ +  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  286 FIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of EY659829 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            FVG + SSIFD+ AGI L+  FVKL++WYDNE+GYS RVVDL+ ++A+
Sbjct:  283 FVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVAE 330          
The following BLAST results are available for this feature:
BLAST of EY659829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3P1_SYNY36.721e-1268.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_RAT8.778e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_MOUSE8.778e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P3_CAEEL8.778e-1270.21Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL8.778e-1270.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_RALSO1.146e-1162.50Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_ONCMY1.146e-1163.04Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P3_CAEBR1.497e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEBR1.497e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_PLESA2.554e-1162.50Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659829 ID=EY659829; Name=EY659829; organism=Citrus sinensis; type=EST; length=341bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGNTGTGCTAAG
TGTGGTGTTTCTTTGCGCTNAATGTGGTGTTTGTGTTTCTATGTAGAAGG
TCTGAGTTTAAATAAATTGTTTCCAGACATTTATCAGAGCCTACCTGCTC
ATGCAGGGTGTGCTTAGATTTTCCCTTGTANNATGCAGAGA
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